Pinned Repositories
bcbio-nextgen
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
chatlab
⚡️ Fast Experimentation 🧪 with OpenAI Chat Function Calling
cho-skin-cd45
couchapp
Utilities to make standalone CouchDB application development simple
demuxlet
Genetic multiplexing of barcoded single cell RNA-seq
gatk4-GenotypeGVCFs-nf
Joint calling of gVCF, following GATK4 Best Practices
jobTree
Pipeline management software for clusters
libdai
clone of Joris Mooij's libDAI at http://people.kyb.tuebingen.mpg.de/jorism/libDAI/
miniwdl-pre-commit
Plugin for pre-commit to check WDL files with miniwdl
yubikey-scripts
Personal experiments for Yubikey 4 (and possibly NEO)
cvaske's Repositories
cvaske/libdai
clone of Joris Mooij's libDAI at http://people.kyb.tuebingen.mpg.de/jorism/libDAI/
cvaske/yubikey-scripts
Personal experiments for Yubikey 4 (and possibly NEO)
cvaske/couchapp
Utilities to make standalone CouchDB application development simple
cvaske/demuxlet
Genetic multiplexing of barcoded single cell RNA-seq
cvaske/jobTree
Pipeline management software for clusters
cvaske/miniwdl-pre-commit
Plugin for pre-commit to check WDL files with miniwdl
cvaske/bcbio-nextgen
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
cvaske/chatlab
⚡️ Fast Experimentation 🧪 with OpenAI Chat Function Calling
cvaske/gatk4-GenotypeGVCFs-nf
Joint calling of gVCF, following GATK4 Best Practices
cvaske/gatk4-HaplotypeCaller-nf
GATK4 HaplotypeCaller step, in gVCF mode, first step for subsequent whole cohort Joint Genotyping.
cvaske/ggseqlogo
Publication-quality sequence logos in R
cvaske/GLIMPSE
Low Coverage Calling of Genotypes
cvaske/gnupg-pkcs11-scd
PKCS#11 GnuPG SCD
cvaske/how-to
A set of quick 1-page how-to guides. These are really just notes that I write for myself, to aid my own memory and learning.
cvaske/IsoApplet
A Java Card PKI Applet aiming to be ISO 7816 compliant
cvaske/miniwdl
Workflow Description Language developer tools & local runner
cvaske/node-gyp
Node.js native addon build tool
cvaske/ollama
Get up and running with Llama 2, Mistral, and other large language models.
cvaske/Paradigm
PAthway Representation and Analysis by Direct Inference on Graphical Models
cvaske/sonLib
Small general purpose library for C and Python with focus on bioinformatics.
cvaske/wdl
Workflow Description Language - Specification and Implementations
cvaske/yubico-piv-tool
Command line tool for the YubiKey PIV application