cvn001

I am a engineer.

Cosmos Wisdom Biotech Co., LtdHangzhou, China

Pinned Repositories

abricate
:mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes
Language:Perl0 0 00
cobra_analysis
Language:Python00
cvn001.github.io
Hexo Blog
Language:HTML0 1 00
PAML_branch_sites_pipeline
PAML pipeline
Language:Python1 1 00
Pangenome-Graphs-in-Infectious-Disease
This repository contains simulated datasets and scripts used for the research paper titled "Pangenome Graphs in Infectious Disease: A Promising and Practical Implementation for Comprehensive Genetic Variation Analysis."
Language:Shell0 0 00
RecentHGT
A novel bioinformatics pipeline for recent horizontal gene transfer detecting.
Language:Python12 2 42
secreted_protein_prediction
Language:Python00
seq2Fun
seq2Fun provides function to annotate protein or coding sequences with KEGG pathways
Language:R10
srst2
Short Read Sequence Typing for Bacterial Pathogens
Language:Python1 0 00
transflow
A snakemake workflow for WGS-based tuberculosis transmission analysis
Language:HTML14 3 106

cvn001's Repositories

cvn001/transflow
A snakemake workflow for WGS-based tuberculosis transmission analysis
Language:HTML14 3 106
cvn001/Pangenome-Graphs-in-Infectious-Disease
This repository contains simulated datasets and scripts used for the research paper titled "Pangenome Graphs in Infectious Disease: A Promising and Practical Implementation for Comprehensive Genetic Variation Analysis."
Language:Shell0 0 00
cvn001/awesome-chatgpt-prompts-zh
ChatGPT 中文调教指南。各种场景使用指南。学习怎么让它听你的话。
0 0
cvn001/awesome-pangenomes
A list of software for pangenomics
cvn001/Candida_auris_CladeVI
WGS analysis for Candida auris
cvn001/chewBBACA
BSR-Based Allele Calling Algorithm
Language:JavaScript0 0
cvn001/chicken-pangenome-paper
Scripts used to perform analyses in Rice et al. (2023)
Language:Jupyter Notebook0 0
cvn001/GO_KEGG_annotation
GO KEGG annotation
cvn001/HIV-DRIVES
Language:Shell0 0
cvn001/HIVepisimAnalysis
Language:R0 0
cvn001/lofreq
LoFreq Star: Sensitive variant calling from sequencing data
cvn001/Lumix-V-log-LUTs
Free LUTs for Panasonic Lumix Vlog color grading
cvn001/monkeypox
Monkeypox public repository
0 0
cvn001/MR_HEM
The code used to conduct the analysis for the study "Li et al., Drug targets for haemorrhoidal disease: proteome-wide Mendelian randomisation and colocalization analyses. Gut 2024".
Language:R0 0
cvn001/mtb-call2
Pipeline for M. tuberculosis variant identification from short-read data
cvn001/mtb-within-host
Signatures of transmission in within-host M. tuberculosis variation
cvn001/panstripe
post processing of bacterial pangenome gene presence/absence matrices
Language:R0 0
cvn001/pathongs
Pathogen NGS Documentary
cvn001/phyloSI-RakaiAgeGender
cvn001/plasnet
Clustering, visualising and exploring plasmid networks
Language:JavaScript0 0
cvn001/PopPIPE
Population analysis PIPEline 🛠🧬
cvn001/ProteoDisco
Generates protein variant sequences based on imported mutations from VCF, MAF and additional files to generate a protein-variant database for use in proteogenomics studies
cvn001/QuasiFlow
A Nextflow Pipeline for Analysis of NGS-based HIV Drug Resistance Data
cvn001/ReporTree
A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data
Language:Python0 0
cvn001/revica
A reference-based viral consensus genome assembly pipeline
cvn001/riboviz
Analysis and Visualization of Ribosome Profiling Data
Language:Python0 0
cvn001/SNPanalysis
Language:Python0 0
cvn001/sprog
Species Probes Generator
cvn001/superpangenome_construction
cvn001/TBSignatureProfiler
Profile RNA-seq data using published TB gene signatures
Language:R0 0