cvraut

I like code 🧬. Lmk if u come across something cool.

Speliotes LabAnn Arbor, MI

Pinned Repositories

504GitExercise
Code to demonstrate simple use of github
Language:Python0 0 00
BIDS-TP_Hackathon_2023
2023 BIDS mini-hackathon project
Language:R0 1 00
Bioinf_prelims
Repository to contain and organize work for my PhD prelims
Language:Jupyter Notebook0 1 60
CS178-easy_DP
jupyter notebook for 2018w
Language:Jupyter Notebook1 2 00
hackuci-monopoly
hacks monopoly
Language:Python2 2 11
iBAG
An R package for the IBAG library
Language:C++0 1 160
jupyter_examples
A collection of example notebooks for the Speliotes Lab
Language:Jupyter Notebook1 1 00
UKB_500K_exome_QC
Some scripts to run QC on the UK Biobank 500k exome data
Language:Jupyter Notebook2 1 20
viLDA
varitional inference Latent Dirichlet Allocation
Language:C++1 1 50
whecho
linux echo but with webhooks! ⚓
Language:Python4 1 60

cvraut's Repositories

cvraut/whecho
linux echo but with webhooks! ⚓
Language:Python4 1 60
cvraut/hackuci-monopoly
hacks monopoly
Language:Python2 2 11
cvraut/UKB_500K_exome_QC
Some scripts to run QC on the UK Biobank 500k exome data
Language:Jupyter Notebook2 1 20
cvraut/jupyter_examples
A collection of example notebooks for the Speliotes Lab
Language:Jupyter Notebook1 1 00
cvraut/viLDA
varitional inference Latent Dirichlet Allocation
Language:C++1 1 50
cvraut/504GitExercise
Code to demonstrate simple use of github
Language:Python0 0 00
cvraut/BIDS-TP_Hackathon_2023
2023 BIDS mini-hackathon project
Language:R0 1 00
cvraut/Bioinf_prelims
Repository to contain and organize work for my PhD prelims
Language:Jupyter Notebook0 1 60
cvraut/BS699_P4
Code for the BS699 rnaseq experiment project
0 1 00
cvraut/crauttools
Series of R functions that help craut work in R
Language:R0 1 60
cvraut/iBAG
An R package for the IBAG library
Language:C++0 1 160
cvraut/PhenoDrugDB
A GPT powered database of drugs and phenotypes they affect
Language:Jupyter Notebook00
cvraut/Boruta-Shap
A Tree based feature selection tool which combines both the Boruta feature selection algorithm with shapley values.
Language:Python0 0
cvraut/Clin_Trial_NLP
2 kids playing with lives & code
cvraut/craut_linux_env
A list of files and utilities to make linux environments more craut development friendly
Language:Vim Script1 2
cvraut/dominion_simulations
A repo to study certain interesting dominion decisions
Language:Jupyter Notebook1 0
cvraut/FAVOR_setup
Some steps and utilities I used to setup the FAVOR database on a private system
Language:Python1 0
cvraut/gene_scraper
some scripts to scrape summaries of genes
Language:Jupyter Notebook1 0
cvraut/Gruntled
video-recording browser extension
cvraut/gruntled-backend
This is the backend repo for the gruntled project
Language:HTML1 0
cvraut/iBAG_supplementary
Supplementary materials & tutorials for iBAG
Language:TeX1 0
cvraut/ibagshiny
A R shiny web app as an example/interface to the iBAG framework.
Language:HTML1 1
cvraut/markdownslides
A "markdown-first" approach for generating beautiful browser-based slides easily. Based on Reveal.js and Reveal-Jekyll.
Language:HTML0 0
cvraut/SAIGE
Development for SAIGE and SAIGE-GENE(+)
Language:C++0 1
cvraut/slalom_test
I want to test the genetic fine-mapping package [SLALOM](https://github.com/mkanai/slalom) & perhaps extend it
Language:Python1 0
cvraut/sshwifty
Web SSH & Telnet (WebSSH & WebTelnet client) 🔮
Language:JavaScript0 0
cvraut/STAARpipeline
An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline
Language:R0 0
cvraut/TCGA-notebooks
A series of python notebooks outlining how to extract and validate data from TCGA
1 0
cvraut/vscode-chatgpt
A Visual Studio Code extension to support ChatGPT. The extension is pair-programmed with ChatGPT.
Language:JavaScript0 0
cvraut/wrobel-template
template website from Jessica Wrobel's personal website
Language:CSS1 0