Pinned Repositories
fastqtl
Enhanced version of the FastQTL QTL mapper
flashpca
Fast Principal Component Analysis of Large-Scale Genome-Wide Data
Folder-Structure-Conventions
Folder / directory structure options and naming conventions for software projects
gtex-pipeline
GTEx & TOPMed data production and analysis pipelines
GWAS_Tutorial
intro-comp-wrkflw
tutorial on common data science toolkit harmonization
liftOverPlink
A wrapper for liftOver for converting plink genotype data between different genome reference builds
PAINTOR_V3.0
Fast, integrative fine mapping with functional data
plink-ng
A comprehensive update to the PLINK association analysis toolset. Beta testing of the first new version (1.90), focused on speed and memory efficiency improvements, is finishing up. Development is now focused on building out support for multiallelic, phased, and dosage data in PLINK 2.0.
Post-QC
Post variant-calling QC pipeline for orienting cohort data with a reference file. Additional steps for merging and phasing with a reference panel.
cwarlysolsberg's Repositories
cwarlysolsberg/GWAS_Tutorial
cwarlysolsberg/fastqtl
Enhanced version of the FastQTL QTL mapper
cwarlysolsberg/flashpca
Fast Principal Component Analysis of Large-Scale Genome-Wide Data
cwarlysolsberg/Folder-Structure-Conventions
Folder / directory structure options and naming conventions for software projects
cwarlysolsberg/gtex-pipeline
GTEx & TOPMed data production and analysis pipelines
cwarlysolsberg/intro-comp-wrkflw
tutorial on common data science toolkit harmonization
cwarlysolsberg/liftOverPlink
A wrapper for liftOver for converting plink genotype data between different genome reference builds
cwarlysolsberg/PAINTOR_V3.0
Fast, integrative fine mapping with functional data
cwarlysolsberg/plink-ng
A comprehensive update to the PLINK association analysis toolset. Beta testing of the first new version (1.90), focused on speed and memory efficiency improvements, is finishing up. Development is now focused on building out support for multiallelic, phased, and dosage data in PLINK 2.0.
cwarlysolsberg/Post-QC
Post variant-calling QC pipeline for orienting cohort data with a reference file. Additional steps for merging and phasing with a reference panel.
cwarlysolsberg/vcf-reference-datasets
cwarlysolsberg/Viral-Track