cwhidden

Dalhousie University

Pinned Repositories

random_spr_walk
Sample trees from a random walk on the subtree prune-and-regraft (SPR) treespace graph
Language:C++1 3 10
rspr
rSPR is a software package for calculating rooted subtree-prune-and-regraft distances and rooted agreement forests.
Language:C++9 2 87
spr_neighbors
Find all trees in a given SPR neighborhood
Language:C++0 4 00
sprspace
A collection of shell and perl scripts for quantifying MCMC exploration of subtree prune-and-regraft tree space in MrBayes posteriors.
Language:Perl6 2 33
uspr
Software for computing the unrooted subtree prune-and-regraft distance between topologies
Language:C++3 3 43
echofilter
A project to filter out echosounder noise by identifying the ocean floor and noisy entrained air at the ocean surface
Language:Python5 3 41
curvatureNNI
What is an elementary modification of a discrete time-tree? Exploring the geometry and Ricci-Ollivier curvature of discrete phylogenetic time-trees.
Language:TeX1 4 160
curvature
Ricci-Ollivier curvature of SPR and related graphs.
Language:TeX2 12 182

cwhidden/rspr
rSPR is a software package for calculating rooted subtree-prune-and-regraft distances and rooted agreement forests.
Language:C++9 2 87
cwhidden/sprspace
A collection of shell and perl scripts for quantifying MCMC exploration of subtree prune-and-regraft tree space in MrBayes posteriors.
Language:Perl6 2 33
cwhidden/uspr
Software for computing the unrooted subtree prune-and-regraft distance between topologies
Language:C++3 3 43
cwhidden/random_spr_walk
Sample trees from a random walk on the subtree prune-and-regraft (SPR) treespace graph
Language:C++1 3 10
cwhidden/spr_neighbors
Find all trees in a given SPR neighborhood
Language:C++0 4 00