cwhittaker1000
Sir Henry Wellcome Research Fellow, MRC Centre for Global Infectious Disease Analysis. Working on epidemiology, infectious disease modelling and public health.
@mrc-ide London
Pinned Repositories
albendazole_pk
🐛💊 Systematic review of Albendazole's pharmacokinetics 💊 🐛
anopheleseasonality
🦟📈 Anopheline occurrence & seasonality across India 📈🦟
CADDE_Workshop_R_Estimation
CADDE Workshop - Practical Materials for "Estimating the Reproduction Number"
covr
Test coverage reports for R
cwhittaker1000
stephenseasonality
🦟📈 🌏Dynamics and seasonality of Anopheles stephensi across Afghanistan, Djibouti, Ethiopia, India, Iran, Myanmar, Pakistan and Saudi Arabia 🌏📉🦟
submicroscopic_malaria
🦟🦠 Global and temporal patterns of submicroscopic malaria 🦠🦟
wastewater_renewal_equation
🦠🏙️🔬Developing and extending renewal-equation based approaches to epidemiological inference to directly integrate wastewater and other environmental surveillance data. 🦠🏙️🔬
apothecary
💊🏥👌 SEIR Model of COVID-19 Transmission for Modelling Impact of Treatments and Therapeutics 👌🏥💊
squire
SEIR transmission model of COVID-19. Documentation at:
cwhittaker1000's Repositories
cwhittaker1000/wastewater_renewal_equation
🦠🏙️🔬Developing and extending renewal-equation based approaches to epidemiological inference to directly integrate wastewater and other environmental surveillance data. 🦠🏙️🔬
cwhittaker1000/anopheleseasonality
🦟📈 Anopheline occurrence & seasonality across India 📈🦟
cwhittaker1000/stephenseasonality
🦟📈 🌏Dynamics and seasonality of Anopheles stephensi across Afghanistan, Djibouti, Ethiopia, India, Iran, Myanmar, Pakistan and Saudi Arabia 🌏📉🦟
cwhittaker1000/submicroscopic_malaria
🦟🦠 Global and temporal patterns of submicroscopic malaria 🦠🦟
cwhittaker1000/albendazole_pk
🐛💊 Systematic review of Albendazole's pharmacokinetics 💊 🐛
cwhittaker1000/CADDE_Workshop_R_Estimation
CADDE Workshop - Practical Materials for "Estimating the Reproduction Number"
cwhittaker1000/covr
Test coverage reports for R
cwhittaker1000/cwhittaker1000
cwhittaker1000/IndianVectorModelling
cwhittaker1000/janiata
Preparing IATA data for analysis
cwhittaker1000/deterministic-malaria-model-stephensi
Deterministic malaria model using odin - adapted to specifically model An.stephensi driven transmission
cwhittaker1000/individual
R Package for individual based epidemiological models
cwhittaker1000/Loa-loa-Drug-Modelling
cwhittaker1000/multitree_illustrative
Illustrating methods used in: Routledge, Isobel, et al. "Estimating spatiotemporally varying malaria reproduction numbers in a near elimination setting." Nature communications 9.1 (2018): 2476.
cwhittaker1000/Schistosomiasis_Modelling
cwhittaker1000/squire.page.sarsX
Extra functions for use with squire and nimue fits
cwhittaker1000/yellow_fever_epiphylo
🦠🦟🔬🧬 Integrated epidemiological and phylogenetic analysis of Yellow Fever 🦠🦟🔬🧬
cwhittaker1000/yellowFever_ecoEpi
cwhittaker1000/yfv_spatial_rcs
Code associated with "Inference of malaria reproduction numbers in three elimination settings by combining temporal data and distance metrics" by Routledge et al.