cwieder

chemometrics-tutorials

cwieder.github.io

metabolomics-ORA

Code for simulations in "Pathway analysis in metabolomics: Pitfalls and best practice for the use of Over-representation Analysis" Wieder C, Frainay C, Poupin N, Rodríguez-Mier P, Vinson F, et al. (2021) Pathway analysis in metabolomics: Recommendations for the use of over-representation analysis. PLOS Computational Biology 17(9): e1009105.

MetHDN

PathIntegrate

PathIntegrate Python package for pathway-based multi-omics data integration

PathIntegrate_scripts

Benchmarking and application scripts for PathIntegrate

py-ssPA

Single sample pathway analysis tools for omics data

sspa-in-metabolomics

Code for the manuscript "Performance evaluation and applicability of single-sample pathway analysis methods to metabolomics data".

SymbNET_tutorial

Pathway analysis tutorial for SymbNET 23

PathwayAnalysis

cwieder/PathIntegrate

PathIntegrate Python package for pathway-based multi-omics data integration

cwieder/py-ssPA

Single sample pathway analysis tools for omics data

cwieder/metabolomics-ORA

Code for simulations in "Pathway analysis in metabolomics: Pitfalls and best practice for the use of Over-representation Analysis" Wieder C, Frainay C, Poupin N, Rodríguez-Mier P, Vinson F, et al. (2021) Pathway analysis in metabolomics: Recommendations for the use of over-representation analysis. PLOS Computational Biology 17(9): e1009105.

cwieder/sspa-in-metabolomics

Code for the manuscript "Performance evaluation and applicability of single-sample pathway analysis methods to metabolomics data".

cwieder/PathIntegrate_scripts

Benchmarking and application scripts for PathIntegrate

cwieder/SymbNET_tutorial

Pathway analysis tutorial for SymbNET 23

cwieder/chemometrics-tutorials

cwieder/cwieder.github.io

cwieder/MetHDN