cyclopenta

504GitExercise

Code to demonstrate simple use of github

bhattacharyya-distance

Computes the Bhattacharyya distance for feature selection in machine learning.

bios626_midterm1

biostat625-group8

chemCPA

Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.

chemical_vae

Code for 10.1021/acscentsci.7b00572, now running on Keras 2.0 and Tensorflow

DMF-DR-seq

esm

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

GEARS

GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations

mylinear

cyclopenta/mylinear

cyclopenta/bios626_midterm1

cyclopenta/504GitExercise

Code to demonstrate simple use of github

cyclopenta/bhattacharyya-distance

Computes the Bhattacharyya distance for feature selection in machine learning.

cyclopenta/biostat625-group8

cyclopenta/chemCPA

Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.

cyclopenta/chemical_vae

Code for 10.1021/acscentsci.7b00572, now running on Keras 2.0 and Tensorflow

cyclopenta/DMF-DR-seq

cyclopenta/esm

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

cyclopenta/GEARS

GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations

cyclopenta/PerturbNet

PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation

cyclopenta/Quantile_Normalize

This function implements quantile normalization in python matrix

cyclopenta/rackham

Quarto template for U-M Rackham Dissertations

cyclopenta/scg_lib_structs

Collections of library structure and sequence of popular single cell genomic methods

cyclopenta/workshops