cyklee

Microbiologist

Auckland University of TechnologyAuckland, New Zealand

Pinned Repositories

cyklee.github.io
Jekyll-powered user page
Language:HTML0 1 00
DATA_SCIENTIST_Movie_recommendations
This project is part of the Openclassrooms DataScientist Curriculum together with CentraleSupélec
Language:Jupyter Notebook0 0 00
datasharing
The Leek group guide to data sharing
0 0 00
dotfiles
Dotfiles and an install script for easy set up
Language:Vim Script0 0 00
eASV-pipeline-for-515Y-926R
This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools
Language:Shell0 0 00
echonetlite_homeassistant
A Home Assistant custom component for use with ECHONET enabled Mitsubishi HVAC systems.
Language:Python0 0 00
fastq2biom
Z shell script automating steps processing Illumina paired-end FASTQ to a BIOM format.
Language:Shell0 1 00
ref-guided-assembly-pipeline
Adapting the pipeline described in Lischer & Schmizu (2017, doi:10.1186/s12859-017-1911-6) for my own use.
Language:Shell3 1 03

cyklee's Repositories

cyklee/ref-guided-assembly-pipeline
Adapting the pipeline described in Lischer & Schmizu (2017, doi:10.1186/s12859-017-1911-6) for my own use.
Language:Shell3 1 03
cyklee/cyklee.github.io
Jekyll-powered user page
Language:HTML0 1 00
cyklee/DATA_SCIENTIST_Movie_recommendations
This project is part of the Openclassrooms DataScientist Curriculum together with CentraleSupélec
Language:Jupyter Notebook0 0 00
cyklee/datasharing
The Leek group guide to data sharing
0 0 00
cyklee/dotfiles
Dotfiles and an install script for easy set up
Language:Vim Script0 0 00
cyklee/eASV-pipeline-for-515Y-926R
This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools
Language:Shell0 0 00
cyklee/echonetlite_homeassistant
A Home Assistant custom component for use with ECHONET enabled Mitsubishi HVAC systems.
Language:Python0 0 00
cyklee/fastq2biom
Z shell script automating steps processing Illumina paired-end FASTQ to a BIOM format.
Language:Shell0 1 00
cyklee/Huntaxa
Search for specified taxa above a specified relative abundance among microbiome studies
Language:Shell0 1 00
cyklee/microbiome_helper
A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.
Language:Python0 0
cyklee/MSc-thermophilic-Armatimonadetes
.RMD files for MSc thesis
0 0
cyklee/r-yaml
R package for converting objects to and from YAML
Language:C0 0
cyklee/snakemake_workshop
Snakemake workshop
Language:HTML0 0
cyklee/STOTEN_FEAST
Cross biome soil-atmosphere source tracking with FEAST
Language:R1 0

cyklee

Pinned Repositories

cyklee.github.io

DATA_SCIENTIST_Movie_recommendations

datasharing

dotfiles

eASV-pipeline-for-515Y-926R

echonetlite_homeassistant

fastq2biom

ref-guided-assembly-pipeline

cyklee's Repositories

cyklee/ref-guided-assembly-pipeline

cyklee/cyklee.github.io

cyklee/DATA_SCIENTIST_Movie_recommendations

cyklee/datasharing

cyklee/dotfiles

cyklee/eASV-pipeline-for-515Y-926R

cyklee/echonetlite_homeassistant

cyklee/fastq2biom

cyklee/Huntaxa

cyklee/microbiome_helper

cyklee/MSc-thermophilic-Armatimonadetes

cyklee/r-yaml

cyklee/snakemake_workshop

cyklee/STOTEN_FEAST