Burni FHIR Server

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Burni is an implementation of the FHIR server with Node, Express, and MongoDB providing very simple ways to customize the HL7 FHIR® specification Currently, Burni support both Windows and Linux environment to enable developers to rapidly deploy a FHIR service. Burni also supports to import your Implementation Guide to store FHIR Resources and create FHIR RESTful API as well. Burni use version 4.0.1 (R4) of the HL7 FHIR specification.

Conformance Statement

Burni has been tested by AEGIS Touchstone Basic-R4-Server. The conformance results show below:

FHIR4-0-1-Basic-Server version 18 (2,216 tests has been passed, 100% Pass)
FHIR4-0-1-Basic-Server version 14 (1,948 tests has been passed, 100% Pass)

features

This server supported FHIR RESTFul API below:

read (e.g. GET http://example.com/fhir/Patient/example)
update (e.g. PUT http://example.com/fhir/Patient/example)
delete (e.g. DELETE http://example.com/fhir/Patient/example)
search (e.g. http://example.com/fhir/Patient?_id=example)
history-type (e.g. http://example.com/fhir/Patient/1/_history)
history-type-version (e.g. e.g. http://example.com/fhir/Patient/1/_history/1)

The resources don't have text field

Don't remove Bundle.js in models/mongodb/FHIRTypeSchema

Installation

npm install

configure

The resources config in config\config.js

module.exports = {
    // add the resource name that you need
    "Patient" : { 
        "interaction": {
            "read": true,
            "vread": true,
            "update": true,
            "delete": true,
            "history": true,
            "create": true,
            "search": true
        }
    }
}

dotenv in root path .env

MONGODB_NAME="dbName"
MONGODB_HOSTS=["mongodb"]
MONGODB_PORTS=[27017]
MONGODB_USER="myAdmin"
MONGODB_PASSWORD="MymongoAdmin1"
MONGODB_IS_SHARDING_MODE=false
MONGODB_SLAVEMODE=false

SERVER_PORT=8080 
SERVER_SESSION_SECRET_KEY="secretKey"

FHIRSERVER_HOST="localhost"
FHIRSERVER_PORT=8080 #use by creating bundle url
FHIRSERVER_APIPATH="fhir"

#If u want to use token auth, add below.
ENABLE_TOKEN_AUTH=true
ADMIN_LOGIN_PATH="adminLogin"  
ADMIN_USERNAME="adminUsername"
ADMIN_PASSWORD="adminPassword"

ENABLE_CHECK_ALL_RESOURCE_ID=false #true that want to check resource id cross all resource
ENABLE_CHECK_REFERENCE #true that want to check reference is exist in resource content
    
ENABLE_CSHARP_VALIDATOR=false
VALIDATION_FILES_ROOT_PATH="/validationResources"
VALIDATION_API_URL="http://burni-fhir-validator-api:7414"

After configuration, run npm run build to generate resources

npm run build

TypeError: genParamFunc[type] is not a function mean that search parameter method not support

Usage

node server.js

RESTful API

get (search)
- Number
- Date (DateTime, Instance Not yet)
- String
- Token
- Reference

GET http://example.com/fhir/Patient

getById (read)

GET http://example.com/fhir/Patient/123

getHistoryById (history, vread)

GET http://example.com/fhir/Patient/_history/

GET http://example.com/fhir/Patient/_history/1

putById (update)

PUT http://example.com/fhir/Patient/1

deleteById (delete)

DELETE http://example.com/fhir/Patient/1

Examples

The details of postman's request body and response: Examples Using Postman

Validation

Thanks to FirelyTeam/firely-net-sdk implement the excellent validator by C#.

Currently, Burni use the C# Web API to do validation. The repository : Chinlinlee/FHIR-Validator-API

TODO

Search parameters
- composite
- uri
Validation

Special project

Raccoon - a noSQL-based DICOMWeb Server.
ngs2fhir - Convert the next generation sequencing (NGS) data to the FHIR Resources.

cylab-tw/SIIM-2022-MIcala-Backend