/rosalind

practice comp bio problems

Primary LanguageJupyter Notebook

Bioinformatics problems from http://rosalind.info/ and the https://stepik.org/course/91751/promo contest implemented in Python and Rust.

  • Install Rust.
  • Install poetry.
  • Build Rust code: cargo b and install Python packages poetry install.
  • Build Python-Rust maturin develop --release in the various Rust libs.
  • Generate large data: python generate_large_test_data.py.
  • Run pytest and cargo criterion to generate benchmarks.