Way more cells available on SRA for FACS sorted Tongue
ftucos opened this issue · 1 comments
ftucos commented
In the paper and the robj available on Figshare you have 1,416 cells in the FACS sorted dataset for the Tongue.
I downloaded the raw fastq files from SRA to obtain RNA velocity but I have 2520 cells available there. Even after applying your recommended cutoff of >500 nFeatures and >50.000 reads I still have more than 2.000 cells.
Am I missing something?
Also, do you provide metadata refereeing to the SRA id for the annotated cells?
aopisco commented
please use the Tabula Muris Senis dataset for reference