Preparing data for few-shot learning with Cell Painting Assay
Order for running scripts: From 1 to 12 (11 can be skipped since we no longer use jsonl files)
/csv folder with 'chemical_annotations.csv', 'processed_data_concat.csv'
/sql folder with 'chembl_31_sqlite/chembl_31.db', or any version of ChEMBL
Blank /jsonl, /temp and /output folder. The /jsonl and /output folder contain the final data
Also refer to the screenshot attached for the layout of the folder