Pinned Repositories
adapt_find
Tool for identifying adapter sequences from single-end sequencing files
cnvkit
Copy number variant detection from targeted DNA sequencing
decona
fastq to polished sequenses: pipeline suitable for mixed samples and long (Nanopore) reads
Flye
De novo assembler for single molecule sequencing reads using repeat graphs
isONclust
De novo clustering of long transcript reads into genes
kraken2
The second version of the Kraken taxonomic sequence classification system
KrakenTools
KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files
llm.c
LLM training in simple, raw C/CUDA
MMseqs2
MMseqs2: ultra fast and sensitive search and clustering suite
RNAnorm
Normalization of RNA-seq gene expression
d-jch's Repositories
d-jch/adapt_find
Tool for identifying adapter sequences from single-end sequencing files
d-jch/RNAnorm
Normalization of RNA-seq gene expression
d-jch/cnvkit
Copy number variant detection from targeted DNA sequencing
d-jch/decona
fastq to polished sequenses: pipeline suitable for mixed samples and long (Nanopore) reads
d-jch/Flye
De novo assembler for single molecule sequencing reads using repeat graphs
d-jch/isONclust
De novo clustering of long transcript reads into genes
d-jch/kraken2
The second version of the Kraken taxonomic sequence classification system
d-jch/KrakenTools
KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files
d-jch/llm.c
LLM training in simple, raw C/CUDA
d-jch/MMseqs2
MMseqs2: ultra fast and sensitive search and clustering suite
d-jch/docker_image_pusher
使用Github Action将国外的Docker镜像转存到阿里云私有仓库，供国内服务器使用，免费易用
d-jch/EvolvePro
This is the offical codebase to reproduce and use EVOLVEpro, a model for in silico directed evolution of protein activities using few-shot active learning.
d-jch/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
d-jch/nf-core-riboseq
d-jch/nf-core-tools
Python package with helper tools for the nf-core community.
d-jch/Rebaler
reference-based long read assemblies of bacterial genomes
d-jch/RFdiffusion
Code for running RFdiffusion
d-jch/Unicycler
hybrid assembly pipeline for bacterial genomes