d4straub
Bioinformatics Research Scientist at the Quantitative Biology Center (QBiC) in the realm of Computational Microbiology
QBiCTübingen, Germany
Pinned Repositories
ampliseq
16S rRNA amplicon sequencing analysis workflow using QIIME2
bacass
Simple bacterial assembly and annotation pipeline
functionalmetagenomics
Assembly-free functional metagenomics pipeline with KneadData and HUMAnN3
genomeassembler
mag
Assembly and binning of metagenomes
modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
nf-core-configs
Config files used to define parameters specific to compute environments at different Institutions
ampliseq
Amplicon sequencing analysis workflow using DADA2 and QIIME2
bacass
Simple bacterial assembly and annotation pipeline
mag
Assembly and binning of metagenomes
d4straub's Repositories
d4straub/functionalmetagenomics
Assembly-free functional metagenomics pipeline with KneadData and HUMAnN3
d4straub/ampliseq
16S rRNA amplicon sequencing analysis workflow using QIIME2
d4straub/bacass
Simple bacterial assembly and annotation pipeline
d4straub/genomeassembler
d4straub/mag
Assembly and binning of metagenomes
d4straub/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
d4straub/nf-core-configs
Config files used to define parameters specific to compute environments at different Institutions
d4straub/rnadeseq
Downstream differential gene expression analysis with DESeq2 package
d4straub/rnaseq
RNA sequencing analysis pipeline using STAR or HISAT2, with gene counts and quality control
d4straub/nf-core-readsimulator
A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.
d4straub/pipesidle
Multipe region amplicon sequencing analysis with SMURF via Sidle in QIIME2
d4straub/test-datasets
Test data to be used for automated testing with the nf-core pipelines
d4straub/vm-playbooks
Ansible playbooks for QIIME 2 environments