/geo-python

Python script to download Gene Expression Omnibus files and parsing header/metadata for list of GEO series.

Primary LanguagePython

Usage

parseGEO is a short script to download files from the Gene Expression Omnibus.

Currently inputs are hardcoded in the script itself, e.g. 'gsenames = ["GSE74432"]'

To use, cd to the folder with the file:

$ python parseGEO.py