dacuevas
Computational biology and bioinformatics PhD student in Dr. Rob Edwards Bioinformatics lab at San Diego State University.
San Diego State UniversitySan Diego, California, USA
Pinned Repositories
cf_pipeline
bioinformatics
Bioinformatics-related scripts.
cobrapy
COBRApy is a package for constraints-based modeling of biological networks
dacuevas.github.io
data_viz
Data visualization scripts
dbbp
DataBase of Bacterial Phenotypes
phenotype_microarray
Phenotype microarray analysis scripts and other files
PMAnalyzer
Phenotypic microarray assay analysis for 96-well multi-plate spectrophotometers.
PMAnalyzerWeb
Website implementation of PMAnalyzer.
PyFBA
A python implementation of flux balance analysis to model microbial metabolism
dacuevas's Repositories
dacuevas/PMAnalyzer
Phenotypic microarray assay analysis for 96-well multi-plate spectrophotometers.
dacuevas/dbbp
DataBase of Bacterial Phenotypes
dacuevas/phenotype_microarray
Phenotype microarray analysis scripts and other files
dacuevas/bioinformatics
Bioinformatics-related scripts.
dacuevas/cobrapy
COBRApy is a package for constraints-based modeling of biological networks
dacuevas/dacuevas.github.io
dacuevas/data_viz
Data visualization scripts
dacuevas/dcuevas-dotfiles
Dot files used in *nix systems.
dacuevas/PMAnalyzerWeb
Website implementation of PMAnalyzer.
dacuevas/edwardslab_CAMI
Repository for CAMI challenge files
dacuevas/ModelSEEDDatabase
This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno approach
dacuevas/PhageHosts
The code used for identification of the hosts of different phages. This is the complete code base used in Edwards, McNair, Wellington-Oguri, and Dutilh, manuscript in preparation.