Pinned Repositories
2020_redcap_db_transition
2022_aml_template
scsnl aml preprocessing scripts + template
flywheel_utils
python flywheel-sdk notebooks used for data extraction
full_reorg_and_processing_fmri
first attempt at complete reorganization of fmri and behav data into bids format. one liners for docker submissions -- bids validation, fmriprep, fitlins first level.
os_installation_and_configs
personal installation and configuration of applications, environments, and settings
scsnl_create_npvisit_batchfiles
various automation and standardization scripts SEE WIKI FOR DETAILED USAGE! (https://github.com/daelsaid/scsnl_create_npvisit_batchfiles/wiki)
scsnl_mathfun_analysis
2019 mathfun scripts
scsnl_project_documentation_utils
general utils and merger scripts to help standardize documentation/excel files etc.
scsnl_utils
various utils for scsnl imaging and project specific data processing
vmreact
https://doi.org/10.1016/j.jpsychires.2019.04.023
daelsaid's Repositories
daelsaid/flywheel_utils
python flywheel-sdk notebooks used for data extraction
daelsaid/scsnl_create_npvisit_batchfiles
various automation and standardization scripts SEE WIKI FOR DETAILED USAGE! (https://github.com/daelsaid/scsnl_create_npvisit_batchfiles/wiki)
daelsaid/scsnl_project_documentation_utils
general utils and merger scripts to help standardize documentation/excel files etc.
daelsaid/scsnl_utils
various utils for scsnl imaging and project specific data processing
daelsaid/2020_redcap_db_transition
daelsaid/2022_aml_template
scsnl aml preprocessing scripts + template
daelsaid/full_reorg_and_processing_fmri
first attempt at complete reorganization of fmri and behav data into bids format. one liners for docker submissions -- bids validation, fmriprep, fitlins first level.
daelsaid/scsnl_mathfun_analysis
2019 mathfun scripts
daelsaid/vmreact
https://doi.org/10.1016/j.jpsychires.2019.04.023
daelsaid/2022_ra_practice_project_template
template for RAs to practice running preprocessing for a test subject
daelsaid/2023_mld_dnn_number_crunching
dataset-number-crunching-for-grants
daelsaid/brainiak
Brain Imaging Analysis Kit
daelsaid/cross-project-duplicate-check-module
Checks for duplicate records (as defined by a certain number of matching fields) across one or more projects.
daelsaid/ezdiff
orig fxn written by cdla, paper establishing methodology via poldrack
daelsaid/fmri_processing_workflows
automated bids file generation, and bidsifying datasets
daelsaid/met_fmri_processing
daelsaid/met_motion_and_rx_coverage
daelsaid/met_project_template
met template scripts
daelsaid/met_unwarpepi
daelsaid/misc
daelsaid/neurodocker
Generate custom Docker and Singularity images, and minimize existing containers
daelsaid/pybids
Python tools for querying and manipulating BIDS datasets.
daelsaid/python_utils_and_functions
daelsaid/redcap
redcap api scripts used for best + various extraction and merging scripts
daelsaid/scsnl_export_results_and_visualization
scsnl thresholding of results data analysis output + notebooks for visualization
daelsaid/scsnl_met_virtualization
various scripts and tasks used in the virtualization of our active data collection projects
daelsaid/scsnl_np_auditing_utils
binder repo to allow for executable notebooks
daelsaid/scsnlScripts
all lab-wide scripts (i.e. preprocessmri) executable with mlsubmit. Includes utils.
daelsaid/TaskBoard
A Kanban-inspired app for keeping track of things that need to get done. (Don't forget to read the Wiki page!)
daelsaid/unison
Unison file synchronizer