/SingleCellOpenProblems

Formalizing and benchmarking open problems in single-cell genomics

Primary LanguageJupyter NotebookMIT LicenseMIT

Open Problems in Single-Cell Analysis

GitHub Workflow Status Coverage Status Netlify Status Code Style: Black Style Guide: OpenStack pre-commit

Formalizing and benchmarking open problems in single-cell genomics.

Visit the Open Problems Website.

For contributing guidelines, see CONTRIBUTING.md.

The team

Core:

  • Scott Gigante (@scottgigante)
  • Daniel Burkhardt (@dburkhardt)
  • Malte Luecken (@LuckyMD)
  • Angela Pisco (@aopisco)
  • Olga Botvinnik (@olgabot)

Task authors (alphabetically):

  • Mohammad Lotfallahi (@M0hammadL) - Label projection task
  • Qian Qin (@qinqian) - Predicting gene expression from chromatin accessibility
  • Michael Vinyard (@mvinyard) - Stress preservation in Dimensionality Reduction
  • Florian Wagner (@flo-compbio) - Data denoising

Supervision (alphabetically):

  • Smita Krishnaswamy, Yale
  • Fabian Theis, Helmholtz Munich

Chan Zuckerberg Initiative Support (alphabetically):

  • Jonah Cool
  • Fiona Griffin