Pinned Repositories
2016_bray_natprot
Supporting data files, documentation, and updated tips for the Cell Painting protocol
2017_Rohban_eLife
2023_Cimini_NatureProtocols
Optimizing the Cell Painting assay for image-based profiling
ashlar
ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration
cell-segmentation
PyTorch implementation of several neural network models for cellular image segmentation
datasets
Images and other data from the JUMP Cell Painting Consortium
maes_microscopy
Official repo for Recursion's accepted spotlight paper at NeurIPS 2023 Generative AI & Biology workshop.
mgx2r
Import mesh and cell graph files from MorphoGraphX software
python_for_microscopists
https://www.youtube.com/channel/UC34rW-HtPJulxr5wp2Xa04w?sub_confirmation=1
tif2blender
Loading and handling microscopy data in blender
daisukekubota0823's Repositories
daisukekubota0823/datasets
Images and other data from the JUMP Cell Painting Consortium
daisukekubota0823/maes_microscopy
Official repo for Recursion's accepted spotlight paper at NeurIPS 2023 Generative AI & Biology workshop.
daisukekubota0823/tif2blender
Loading and handling microscopy data in blender
daisukekubota0823/VollSeg
Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Available via pip package vollseg.
daisukekubota0823/ZetaStitcher
ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light-Sheet Fluorescence Microscopes.
daisukekubota0823/2023_Cimini_NatureProtocols
Optimizing the Cell Painting assay for image-based profiling
daisukekubota0823/HeLa-Cell-Segmentation
Segmentation, Measurement and Visualisation of Nuclear Envelope of HeLa Cells observed with Electron Microscope
daisukekubota0823/humble-yolo
Deep Learning Yolo tutorials with minimalist examples to complex coding
daisukekubota0823/python_for_microscopists
https://www.youtube.com/channel/UC34rW-HtPJulxr5wp2Xa04w?sub_confirmation=1
daisukekubota0823/BigTrace
FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets
daisukekubota0823/CLAM
Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering
daisukekubota0823/DinoBloom
Blood Cell Foundation Model based on DINOv2
daisukekubota0823/fastMRI
A large-scale dataset of both raw MRI measurements and clinical MRI images.
daisukekubota0823/Goo
Goo is a Blender library for modeling biological cells, tissues, and embryos
daisukekubota0823/instanseg
daisukekubota0823/legitify
Detect and remediate misconfigurations and security risks across all your GitHub and GitLab assets
daisukekubota0823/mobie
MultiModal Big Image Data Sharing and Exploration
daisukekubota0823/monodepth2
[ICCV 2019] Monocular depth estimation from a single image
daisukekubota0823/napari-spatialdata
Interactive visualization of spatial omics data
daisukekubota0823/PathGPT
daisukekubota0823/Pearl
A Production-ready Reinforcement Learning AI Agent Library brought by the Applied Reinforcement Learning team at Meta.
daisukekubota0823/PEARL-gem
Learning High-Quality and General-Purpose Phrase Representations. Findings of EACL 2024
daisukekubota0823/pycytominer
cytominer python package
daisukekubota0823/report-results-api-examples
Examples using GIA's Report Results API
daisukekubota0823/RingAppraisal
Ring appraisal machine learning model and Flask app
daisukekubota0823/Slicer
Multi-platform, free open source software for visualization and image computing.
daisukekubota0823/sp_classify_lung_diseases
daisukekubota0823/superset
Apache Superset is a Data Visualization and Data Exploration Platform
daisukekubota0823/syncthing
Open Source Continuous File Synchronization
daisukekubota0823/VVDViewer
3D/4D volumetric rendering of microscopy data