Data Science in Systems Biology

The research group Data Science in Systems Biology at the School of Life Sciences, Technical University of Munich

Freising, Germany

Pinned Repositories

ASimulatoR
ASimulatoR: splice-aware RNA-seq data simulation https://doi.org/10.1093/bioinformatics/btab142
Language:R6 5 61
BiCoN
Network Constrained Biclustering PyPI package
Language:Python10 5 122
BiCoN-web
Network Constrained Biclustering (BiCoN) web platform
Language:JavaScript4 3 101
data-leakage-ppi-prediction
Code associated with the paper 'Cracking the blackbox of deep sequence-based protein-protein interaction prediction'
Language:C++18 3 01
epigen
EpiGEN: an epistasis simulation pipeline
Language:Python8 6 44
HiTSeekR
An R shiny web application for the analysis of various types of high-throughput screening data
Language:R4 4 93
namco
Language:R8 3 622
OpenLabFramework
A open source framework for research data management. DEMO at https://dockerhts.compbio.sdu.dk/OpenLabFramework/login/auth
Language:JavaScript21 9 206
SPONGE
Sparse Partial correlation ON Gene Expression - an R package for fast and robust ceRNA network inference
Language:R11 5 49
TF-Prioritizer
Bioinformatics pipeline to identify differentially active transcription factors between conditions using expression and epigenetic data
Language:Java13 3 130

Data Science in Systems Biology's Repositories

daisybio/TF-Prioritizer
Bioinformatics pipeline to identify differentially active transcription factors between conditions using expression and epigenetic data
Language:Java13 3 130
daisybio/SPONGE
Sparse Partial correlation ON Gene Expression - an R package for fast and robust ceRNA network inference
Language:R11 5 49
daisybio/BiCoN
Network Constrained Biclustering PyPI package
Language:Python10 5 122
daisybio/namco
Language:R8 3 622
daisybio/cyanus
A Systematic Comparison of Differential Analysis Methods for CyTOF Data & CYANUS App
Language:R4 3 112
daisybio/HiTSeekR
An R shiny web application for the analysis of various types of high-throughput screening data
Language:R4 4 93
daisybio/drevalpy
Language:Python3 4 46
daisybio/NeEDL
Language:C++3 3 50
daisybio/DysRegNet_package
Inferring patient-specific regulatory alterations
Language:Jupyter Notebook2 2 00
daisybio/16S-rRNA-gene-Functional_benchmark_profiling
Language:C#1 2 0
daisybio/CyTOF_RPs_MPs
Language:R1 2 0
daisybio/Ex-Breast-Cancer-Survival
Language:Jupyter Notebook1 2 0
daisybio/SPONGE-web-backend
Language:Python0 2 00
daisybio/SPONGE-web-frontend
Language:TypeScript0 3 10
daisybio/teff-treg-satb1-analysis
Language:Jupyter Notebook0 2 00
daisybio/CADDIE-backend
Language:Python3 01
daisybio/CADDIE-frontend
Language:TypeScript3 0
daisybio/caddiepy
The python package to the Cancer Driver Drug Interaction Explorer (CADDIE)
Language:Python2 0
daisybio/CIRCEST-downstream
Language:R2 0
daisybio/Cyanus-Paper-Code
Code associated with the paper "A systematic comparison of novel and existing differential analysis methods for CyTOF data", more specifically, the data generation and the DE methdos comparison
Language:R2 0
daisybio/cyanus_functions
Language:R2 0
daisybio/CyEMD_package
CyEMD: A differential analysis method developed for CyTOF data
Language:R3 0
daisybio/DIGGER
Fork for developing Digger 2.0
Language:HTML0 122
daisybio/Dimmer
Language:Java5 11
daisybio/DysRegNet_workflow
Language:Python2 0
daisybio/easyLiftover
This repository wraps the pyliftover package to provide an option for lifting over common bioinformatics file types.
Language:Python1 3
daisybio/EEN-sPLSDA
Language:HTML2 0
daisybio/gene_signatures
Language:HTML2 01
daisybio/IHEC-AS
Language:R2 01
daisybio/nedrexdb
A repository containing the code for building and hosting NeDRexDB
Language:Python0 01