Pinned Repositories
aws-workflows-nextflow-infra
AWS CloudFormation templates for deploying Nextflow infrastructure
bf528
BF528 | Applications in Translational Bioinformatics Final Project
fetchngs
Pipeline to fetch metadata and raw FastQ files from public databases
modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
nf-fetchngs-synapse
Wraps SynapseClient CLI to generate samplesheet used for nf-core pipelines
rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
sageseqr
A workflow for exploring and analyzing RNA-seq data.
scrnaseq
A single-cell RNAseq pipeline for 10X genomics data
test-datasets
Test data to be used for automated testing with the nf-core pipelines
fetchngs
Pipeline to fetch metadata and raw FastQ files from public databases
daisyhan97's Repositories
daisyhan97/nf-fetchngs-synapse
Wraps SynapseClient CLI to generate samplesheet used for nf-core pipelines
daisyhan97/sageseqr
A workflow for exploring and analyzing RNA-seq data.
daisyhan97/aws-workflows-nextflow-infra
AWS CloudFormation templates for deploying Nextflow infrastructure
daisyhan97/bf528
BF528 | Applications in Translational Bioinformatics Final Project
daisyhan97/fetchngs
Pipeline to fetch metadata and raw FastQ files from public databases
daisyhan97/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
daisyhan97/rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
daisyhan97/scrnaseq
A single-cell RNAseq pipeline for 10X genomics data
daisyhan97/test-datasets
Test data to be used for automated testing with the nf-core pipelines