/dimLab-Wiki

Digital Image Processing Wiki

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Digital Image Processing pipelines

Introduction

dimLab is a collection of digital image processing pipelines. It uses:

napari:

Multi-dimensional image viewer for python. napari is a fast, interactive, multi-dimensional image viewer for Python. It’s designed for browsing, annotating, and analyzing large multi-dimensional images. It’s built on top of Qt (for the GUI), vispy (for performant GPU-based rendering), and the scientific Python stack (numpy, scipy). https://napari.org/stable/

cellpose:

a generalist algorithm for cellular segmentation https://github.com/MouseLand/cellpose

pytorch:

An open source machine learning framework that accelerates the path from research prototyping to production deployment.https://pytorch.org/

openCV:

OpenCV is an open source computer vision and machine vision library, mainly for computer vision and computer vision applications. It is mainly used for image processing and computer vision. https://opencv.org/

Napari Plugins

  1. napari-cellpose
  2. napari-clusters-plotter

Contributors

dalelab