Confusing error for too many pybedtools intersect -b files
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dcdxy-danielle commented
When trying to run pybedtools intersect
with hundreds of -b
files, I received:
Error message was:
Error: Unable to open file <filename.bed.gz>. Exiting.
However, I was able to run bedtools intersect
between -a
file and the problematic -b
file alone successfully on the command line. I tried slicing my list of -b
files in various ways, and it seems that there is a cap of 253 -b
files. It might be worth adding a more descriptive error for this case.
bedtools v2.29.0
pybedtools==0.8.0