python3.8 - runtime warning
roni-fultheim opened this issue · 5 comments
roni-fultheim commented
When intersecting using python3.8.5 and latest version of pybedtools, I am getting this warning:
RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used
If possible, can this be fixed?
Thank you
daler commented
Thanks for reporting. This should be addressed in v0.8.2, now on PyPI. Would you please check to see if this corrects the issue?
roni-fultheim commented
I installed pybedtools using conda,is the new version available on conda as
well? Thank you
daler commented
Yes -- it's on bioconda as well.
roni-fultheim commented
Thank you. Worked.
Also much faster, thanks!
…On Mon, Mar 15, 2021 at 3:45 PM Ryan Dale ***@***.***> wrote:
Yes -- it's on bioconda as well.
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daler commented
Not sure I can explain any speed differences, but I'm glad it's working.