Pinned Repositories
bayes
BayesianLatentClassRegression
CRFer.jl
Bayesian CRF Model in Julia
dan-sprague.github.io
fastaN
split fasta files by ambiguous base calls
fastaOHE
java program to quickly convert a fasta file to OHE for NNs
gffpar
a tool to parse GFF files into python dictionary objects
mSEEKR
seekr
A library for counting small kmer frequencies in nucleotide sequences.
winSEEKR
a collection of tools for RNA/DNA sequence analysis
dan-sprague's Repositories
dan-sprague/mSEEKR
dan-sprague/winSEEKR
a collection of tools for RNA/DNA sequence analysis
dan-sprague/bayes
dan-sprague/BayesianLatentClassRegression
dan-sprague/CRFer.jl
Bayesian CRF Model in Julia
dan-sprague/dan-sprague.github.io
dan-sprague/fastaN
split fasta files by ambiguous base calls
dan-sprague/fastaOHE
java program to quickly convert a fasta file to OHE for NNs
dan-sprague/gffpar
a tool to parse GFF files into python dictionary objects
dan-sprague/seekr
A library for counting small kmer frequencies in nucleotide sequences.
dan-sprague/seekrCons
phyloP analysis of seeks hits
dan-sprague/thesis
dan-sprague/transcriptomePRC
search the transcriptome for domains that recruit RBPs/PRC
dan-sprague/tScan
nth order markov search for DNA sequences