danieljosephgomez
Bioinformatician. Master's student @ Cal State East Bay & Genetics Department, Stanford School of Medicine, Stanford Cancer Institute
@StanfordBioinformatics @MoTrPACSF Bay Area
Pinned Repositories
cwltool
Common Workflow Language reference implementation
danieljgomez
Professional Page (most updated)
danieljosephgomez
danieljosephgomez.github.io
Daniel's personal webpage
galaxy
Data intensive science for everyone.
gtex-v8
Notebooks and scripts for reproducing analyses and figures from the V8 GTEx Consortium paper
istar
liana-py
LIANA+: an all-in-one framework for cell-cell communication
maxfuse
stellar
danieljosephgomez's Repositories
danieljosephgomez/danieljgomez
Professional Page (most updated)
danieljosephgomez/danieljosephgomez
danieljosephgomez/danieljosephgomez.github.io
Daniel's personal webpage
danieljosephgomez/gtex-v8
Notebooks and scripts for reproducing analyses and figures from the V8 GTEx Consortium paper
danieljosephgomez/liana-py
LIANA+: an all-in-one framework for cell-cell communication
danieljosephgomez/stellar
danieljosephgomez/vitessceR
R API and htmlwidget for Vitessce
danieljosephgomez/cwltool
Common Workflow Language reference implementation
danieljosephgomez/galaxy
Data intensive science for everyone.
danieljosephgomez/istar
danieljosephgomez/maxfuse
danieljosephgomez/biofx_python
Code for Mastering Python for Bioinformatics (O'Reilly, 2021, ISBN 9781098100889)
danieljosephgomez/CHM13
The complete sequence of a human genome
danieljosephgomez/codex-pipeline
CODEX data processing code
danieljosephgomez/Coffee-Lover
danieljosephgomez/GASTON
danieljosephgomez/genomics-workshop
danieljosephgomez/gtex-pipeline
GTEx & TOPMed data production and analysis pipelines
danieljosephgomez/intro_dgm
"Deep Generative Modeling": Introductory Examples
danieljosephgomez/MyProject
danieljosephgomez/ott
Optimal transport tools implemented with the JAX framework, to get differentiable, parallel and jit-able computations.
danieljosephgomez/reproducible-research
danieljosephgomez/scGPT
scGPT fine-tuned to an NeuroExerkineMap
danieljosephgomez/sma
danieljosephgomez/sopa
Technology-invariant pipeline for spatial-omics analysis (Xenium / MERSCOPE / CosMx / PhenoCycler / MACSima / Hyperion) that scales to millions of cells
danieljosephgomez/spatial
Single-Cell Spatial Explorer
danieljosephgomez/SpiceMix
spatial transcriptome, single cell
danieljosephgomez/Stereopy
A toolkit of spatial transcriptomic analysis.