danielle-khost/DMI1

D. melanogaster ISO1 ONT Assembly Pipeline

DMI1

D. melanogaster ISO1 ONT Assembly Pipeline

Incase you are having issues downloading fastq files from NCBI, I have included links below.

albacore 2.02 basecalled reads. Pass only https://hpc.oit.uci.edu/~solarese/ont/diso1_a2_pass.fastq.gz

Canu 1.5 corrected reads https://hpc.oit.uci.edu/~solarese/ont/iso1onpa2.correctedReads.fasta.gz

DBG2OLC draft assembly https://hpc.oit.uci.edu/~solarese/ont/iso1_dbg2olc_asm.fasta.gz

Canu 1.5 draft assembly https://hpc.oit.uci.edu/~solarese/ont/iso1_canu_v1.5.fasta.gz

Quickmerged Final Polished assembly https://hpc.oit.uci.edu/~solarese/ont/iso1_qm_final_asm.fasta.gz