BiaPyX/BiaPy

Issues

• Add more image quality metrics

  #46 opened 3 months ago by iarganda
  1

• Enable Bioimage Model Zoo pretrained models for training

  #37 opened 3 months ago by danifranco
  1

• Remove imgaug dependency

  #61 opened 8 months ago by danifranco
  3

• error during TEST/INFERENCE using percentile normalization in detection workflow [bug]

  #79 opened 4 months ago by pr4deepr
  9

• Memory error in UNET prediction with patches

  #81 opened 5 months ago by mcblache
  7

• running biapy after pip install

  #73 opened 5 months ago by pr4deepr
  6

• Error with unet training. Capabilities problem ?

  #80 opened 5 months ago by mcblache
  1

• documentation suggestion

  #78 opened 6 months ago by pr4deepr
  1

• bug: import error: pytorch_msssim

  #77 opened 6 months ago by pr4deepr
  1

• Incorporate Zarr/H5 as a source of training data

  #36 opened 6 months ago by danifranco
  1

• Add more options to select patches for training

  #75 opened 6 months ago by danifranco
  1

• Incorrect number of epochs on metric plot

  #72 opened 6 months ago by iarganda
  1

• bug: Biapy crashes with detection workflow on latest branch

  #74 opened 6 months ago by pr4deepr
  1

• Link to templates from Docs broken for Super-resolution

  #69 opened 7 months ago by Mohinta2892
  1

• Detection could be multi threaded

  #67 opened 7 months ago by ClementCaporal
  0

• Allow classes into instance segmentation workflow

  #62 opened 8 months ago by danifranco
  1

• Zarr/H5 post-processing for instance segmentation

  #41 opened 10 months ago by danifranco
  0

• Add support for .nii.gz extension

  #39 opened 10 months ago by danifranco
  0

• Rotation 90

  #63 opened 8 months ago by danifranco
  0

• Wrong net architecture in 3D Classification notebook

  #59 opened 8 months ago by iarganda
  2

• Error in 3D classification notebook

  #58 opened 8 months ago by iarganda
  1

• Error when first detection df_patch is null

  #55 opened 8 months ago by ClementCaporal
  0

• Possible Patch related errors for detection

  #50 opened 8 months ago by ClementCaporal
  12

• Add more data pre-processing

  #40 opened 9 months ago by AAitorG
  0

• Input zarr axes order in config file while loading Zarr/H5

  #43 opened 9 months ago by ClementCaporal
  3

• Zarr loading breaks when the zarr has group before arrays

  #47 opened 9 months ago by ClementCaporal
  0

• Add more statistics for instances

  #35 opened 9 months ago by danifranco
  1

• Support Torchvision models

  #38 opened 9 months ago by danifranco
  1

• Error handling TIFFs created in MIB

  #42 opened 10 months ago by sgtsmg90
  1

• TTA fails on semantic segmentation workflow

  #30 opened a year ago by iarganda
  2

• pypi / conda package

  #29 opened a year ago by haesleinhuepf
  2

• MitoEM training killed

  #27 opened a year ago by Mohinta2892
  5

• Dockerfile build fails: base image missing

  #28 opened a year ago by Mohinta2892
  2

• Question about Attention U-net

  #26 opened a year ago by HenryLyu
  2

• Unstable training for lucchi and lucchi_pp datasets

  #25 opened 2 years ago by HenryLyu
  4

• Failed to load a model

  #22 opened 2 years ago by sbinnee
  0

• `data.generators.simple_data_generator` does not respect empty mask

  #21 opened 2 years ago by sbinnee
  2

• when I try to run the main.py error occured

  #19 opened 2 years ago by YDyd11
  8

• Prevent NaN values of the Jaccard index

  #1 opened 5 years ago by iarganda
  0