danking
A software engineer and leader building systems that enable the discovery of novel biology.
The Broad Institute of MIT and HarvardNew York, NY
Pinned Repositories
dhc
Durham Haskell Compiler
hail-cloud-docs
lang-scsh
A Racket #lang library for scsh
Parameterized-Ruby-Unit-Tests
An extension for test/unit to allow parameterized unit tests a la JUnit
pda-to-pda-risc
Converts a PDA into a lower-level PDA-RISC which is easier to flow analyze
racket-ml
A collection of things I found useful for doing Machine Learning problem sets.
tea-script
Because I hate coffee and I have a lisp
hail
Cloud-native genomic dataframes and batch computing
vortex
An extensible, state-of-the-art columnar file format
danking's Repositories
danking/aiohttp
Asynchronous HTTP client/server framework for asyncio and Python
danking/arrow
Apache Arrow is the universal columnar format and multi-language toolbox for fast data interchange and in-memory analytics
danking/dnsguide
A guide to writing a DNS Server from scratch in Rust
danking/duckdb-experiments
danking/firecloud-tools
Tools for use with FireCloud
danking/gatk
Official code repository for GATK versions 4 and up
danking/gnomad_qc
danking/hail
Hail, a framework for scalable genetic data analysis
danking/hail-paper-2023
danking/hail-paper-2024
danking/hail_serv
danking/hep-hail
danking/homebrew-emacs-plus
Emacs Plus formulae for the Homebrew package manager
danking/install-gcs-connector
Downloads and installs the google storage connector which lets hadoop directly read/write files in google storage.
danking/jgscm
Jupyter support for Google Cloud Storage
danking/leonardo
Notebook service
danking/log-test
danking/mkdocstrings
:blue_book: Automatic documentation from sources, for MkDocs.
danking/pandas
Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more
danking/perelman-geometry
danking/polars
Dataframes powered by a multithreaded, vectorized query engine, written in Rust
danking/pyright
Static Type Checker for Python
danking/pytest-asyncio-confusion
danking/python-tabulate
Pretty-print tabular data in Python, a library and a command-line utility. Repository migrated from bitbucket.org/astanin/python-tabulate.
danking/release-plz
Publish Rust crates from CI with a Release PR.
danking/repro-for-google-sheets
danking/ruff
An extremely fast Python linter and code formatter, written in Rust.
danking/typeshed
Collection of library stubs for Python, with static types
danking/vortex
A toolkit for working with compressed Arrow in-memory, on-disk, and over-the-wire
danking/ww2023