Pinned Repositories
2kplus2
2kplus2 bubbles detection
bioruby-gngm
Identify causative mutations in a model genome from NGS reads using the NGM method.
bioruby-svgenes
SVG format genome browser style pictures
bsblast
Varied tools for parsing and printing pretty blasts from de-novo peptide sequencing
crowdsrc
Generic and blank repository for holding crowdsourced genomics data
gee_fu
An extensible Ruby on Rails web-service application and database for visualising HTGS data
NiBLS
Implementation of an algorithm that can determine small RNA generative loci from high-throughput sequencing data.
PhosCalc
The Sainsbury Lab Tool for estimating the likelihood of phosphorylation at possible sites in a peptide from Mass Spec data
Solexa
Set of modules for working with htgs reads and related software, maq, Bowtie etc
tf_cnn
Code and data for a CNN based predictor of Arabidopsis transcriptional regulation interactions
danmaclean's Repositories
danmaclean/2kplus2
2kplus2 bubbles detection
danmaclean/intro_to_stats
Source for TSL intro to stats course
danmaclean/rbioinfcookbook
Data package to accompany the R Bioinformatics Cookbook 2nd Ed
danmaclean/simplebf
A package for simple Bayes Factor analysis
danmaclean/bayes_factors
A primer on bayesian inference
danmaclean/data_science
Data Science Course Handbook
danmaclean/data_science_tsl
Front Page For TSL internal training
danmaclean/databases
danmaclean/databases_colab
helpers for the databases course when run on colab
danmaclean/empty_repo
An example empty project repo
danmaclean/estimation_statistics
A short course on using Estimation Statistics
danmaclean/ganttrify
Create beautiful Gantt charts with ggplot2
danmaclean/ggplotbook
short book for ggplot beginners. Read here:
danmaclean/greypatch
Finding Disease Lesions in Plant Leaves
danmaclean/hsvfinder
A Python+OpenCV implementation that reports HSV value ranges in selected areas. Works similar to Adobe Photoshop's magic wand selection tool.
danmaclean/intro_to_ml
Introduction to machine learning algorithms
danmaclean/itssl
helper package for intro to stats course
danmaclean/literate_computing
danmaclean/make_empty_repo
Run this to quickly make an empty project repo
danmaclean/NLRtracker
NLR annotation tool
danmaclean/peppwR
What the Package Does (One Line, Title Case)
danmaclean/phyreresults
contains Phyre2 results for training
danmaclean/programming_with_python
danmaclean/r-tutorials
R and bioinformatics tutorials for MSc Global Plant Health
danmaclean/snakemake
A short tutorial on using snakemake
danmaclean/tao_of_programming
danmaclean/ten_things
danmaclean/test
danmaclean/test_assembly
danmaclean/tidyversebook
Tidyverse Teaching Materials: Read Here