danpak94/Deep-Cardiac-Volumetric-Mesh

Deep-Cardiac-Volumetric-Mesh (DeepCarve)

Check out our project page

1. Heart mesh generation for biomechanics in <1 second
2. dcvm python package for pytorch model inference
3. 3D Slicer visualization for inference

Sample results (TMI 2023)

System requirements

1. Windows or Linux (requires CUDA for now)
2. Download 3D slicer

Instructions

Check our project page for video instructions!

Citation

@article{pak2023patient,
  title={Patient-specific Heart Geometry Modeling for Solid Biomechanics using Deep Learning},
  author={Pak, Daniel H and Liu, Minliang and Kim, Theodore and Liang, Liang and Caballero, Andres and Onofrey, John and Ahn, Shawn S and Xu, Yilin and McKay, Raymond and Sun, Wei and others},
  journal={IEEE Transactions on Medical Imaging},
  year={2023},
  publisher={IEEE}
}
@inproceedings{pak2021distortion,
  title={Distortion Energy for Deep Learning-Based Volumetric Finite Element Mesh Generation for Aortic Valves},
  author={Pak, Daniel H and Liu, Minliang and Kim, Theodore and Liang, Liang and McKay, Raymond and Sun, Wei and Duncan, James S},
  booktitle={International Conference on Medical Image Computing and Computer-Assisted Intervention},
  pages={485--494},
  year={2021},
  organization={Springer}
}