In file included from lilcom/lilcom_extension.cc:15: In file included from lilcom/compression.h:6: lilcom/int_stream.h:7:10: fatal error: 'vector' file not found #include <vector> ^~~~~~~~ 1 error generated. error: command 'gcc' failed with exit status 1

Question

In file included from lilcom/lilcom_extension.cc:15: In file included from lilcom/compression.h:6: lilcom/int_stream.h:7:10: fatal error: 'vector' file not found #include <vector> ^~~~~~~~ 1 error generated. error: command 'gcc' failed with exit status 1

Closed this issue 4 years ago · 15 comments

python3 setup.py install --user
running install
error: [Errno 13] Permission denied: '/Users/wuxb/Library/Python/3.7/lib'
wuxb@wuxbdeMacBook-Pro lilcom % sudo python3 setup.py install --user
Password:
running install
running bdist_egg
running egg_info
writing lilcom.egg-info/PKG-INFO
writing dependency_links to lilcom.egg-info/dependency_links.txt
writing requirements to lilcom.egg-info/requires.txt
writing top-level names to lilcom.egg-info/top_level.txt
reading manifest file 'lilcom.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'lilcom.egg-info/SOURCES.txt'
installing library code to build/bdist.macosx-10.6-intel/egg
running install_lib
running build_py
running build_ext
building 'lilcom.lilcom_extension' extension
gcc -fno-strict-aliasing -Wsign-compare -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -arch i386 -arch x86_64 -g -I/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/core/include -I/Library/Frameworks/Python.framework/Versions/3.7/include/python3.7m -c lilcom/lilcom_extension.cc -o build/temp.macosx-10.6-intel-3.7/lilcom/lilcom_extension.o -g -Wall -UNDEBUG -Wno-c++11-compat-deprecated-writable-strings
clang: warning: include path for libstdc++ headers not found; pass '-stdlib=libc++' on the command line to use the libc++ standard library instead [-Wstdlibcxx-not-found]
clang: warning: include path for libstdc++ headers not found; pass '-stdlib=libc++' on the command line to use the libc++ standard library instead [-Wstdlibcxx-not-found]
In file included from lilcom/lilcom_extension.cc:15:
In file included from lilcom/compression.h:6:
lilcom/int_stream.h:7:10: fatal error: 'vector' file not found
#include
^~~~~~~~
1 error generated.
error: command 'gcc' failed with exit status 1

gcc --version
Configured with: --prefix=/Library/Developer/CommandLineTools/usr --with-gxx-include-dir=/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/4.2.1
Apple clang version 12.0.0 (clang-1200.0.32.21)
Target: x86_64-apple-darwin19.4.0
Thread model: posix
InstalledDir: /Library/Developer/CommandLineTools/usr/bin

Answer 1 · 2021-01-05T11:44:20.000Z

I'm having trouble understanding what is going wrong here. It should recognize that it's compiling C++ by virtue of the file extension (.cc). Try changing the line in setup.py that defines extra_compile_args to the following: extra_compile_args=["-g", "-stdlib=c++", "-Wall", "-UNDEBUG", "-Wno-c++11-compat-deprecated-writable-strings"], ... but it is very odd that that would be necessary. Do you know of anything unusual about your toolchain? Problems building other packages?

…

On Tue, Jan 5, 2021 at 7:26 PM wuxiaobo ***@***.***> wrote: python3 setup.py install --user running install error: [Errno 13] Permission denied: '/Users/wuxb/Library/Python/3.7/lib' ***@***.*** lilcom % sudo python3 setup.py install --user Password: running install running bdist_egg running egg_info writing lilcom.egg-info/PKG-INFO writing dependency_links to lilcom.egg-info/dependency_links.txt writing requirements to lilcom.egg-info/requires.txt writing top-level names to lilcom.egg-info/top_level.txt reading manifest file 'lilcom.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'lilcom.egg-info/SOURCES.txt' installing library code to build/bdist.macosx-10.6-intel/egg running install_lib running build_py running build_ext building 'lilcom.lilcom_extension' extension gcc -fno-strict-aliasing -Wsign-compare -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -arch i386 -arch x86_64 -g -I/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/core/include -I/Library/Frameworks/Python.framework/Versions/3.7/include/python3.7m -c lilcom/lilcom_extension.cc -o build/temp.macosx-10.6-intel-3.7/lilcom/lilcom_extension.o -g -Wall -UNDEBUG -Wno-c++11-compat-deprecated-writable-strings clang: warning: include path for libstdc++ headers not found; pass '-stdlib=libc++' on the command line to use the libc++ standard library instead [-Wstdlibcxx-not-found] clang: warning: include path for libstdc++ headers not found; pass '-stdlib=libc++' on the command line to use the libc++ standard library instead [-Wstdlibcxx-not-found] In file included from lilcom/lilcom_extension.cc:15: In file included from lilcom/compression.h:6: lilcom/int_stream.h:7:10: fatal error: 'vector' file not found #include ^~~~~~~~ 1 error generated. error: command 'gcc' failed with exit status 1 gcc --version Configured with: --prefix=/Library/Developer/CommandLineTools/usr --with-gxx-include-dir=/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/4.2.1 Apple clang version 12.0.0 (clang-1200.0.32.21) Target: x86_64-apple-darwin19.4.0 Thread model: posix InstalledDir: /Library/Developer/CommandLineTools/usr/bin — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#29>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AAZFLO3UOR3DSXFQ3XJ6JFLSYLZQDANCNFSM4VU5CS2A> .

Answer 2 · 2021-01-05T11:46:01.000Z

Wait, now I see you're running as root. That's not right. You should just jump to using sudo any time you get a permission problem. Doing that kind of thing is likely to screw up your computer pretty quick, you'll have files owned by root owned where they shouldn't be. Anyway, installing as --user with sudo may be trying to install it in root's homedir or something.

…

On Tue, Jan 5, 2021 at 7:44 PM Daniel Povey ***@***.***> wrote: I'm having trouble understanding what is going wrong here. It should recognize that it's compiling C++ by virtue of the file extension (.cc). Try changing the line in setup.py that defines extra_compile_args to the following: extra_compile_args=["-g", "-stdlib=c++", "-Wall", "-UNDEBUG", "-Wno-c++11-compat-deprecated-writable-strings"], ... but it is very odd that that would be necessary. Do you know of anything unusual about your toolchain? Problems building other packages? On Tue, Jan 5, 2021 at 7:26 PM wuxiaobo ***@***.***> wrote: > python3 setup.py install --user > running install > error: [Errno 13] Permission denied: '/Users/wuxb/Library/Python/3.7/lib' > ***@***.*** lilcom % sudo python3 setup.py install --user > Password: > running install > running bdist_egg > running egg_info > writing lilcom.egg-info/PKG-INFO > writing dependency_links to lilcom.egg-info/dependency_links.txt > writing requirements to lilcom.egg-info/requires.txt > writing top-level names to lilcom.egg-info/top_level.txt > reading manifest file 'lilcom.egg-info/SOURCES.txt' > reading manifest template 'MANIFEST.in' > writing manifest file 'lilcom.egg-info/SOURCES.txt' > installing library code to build/bdist.macosx-10.6-intel/egg > running install_lib > running build_py > running build_ext > building 'lilcom.lilcom_extension' extension > gcc -fno-strict-aliasing -Wsign-compare -fno-common -dynamic -DNDEBUG -g > -fwrapv -O3 -Wall -arch i386 -arch x86_64 -g > -I/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/core/include > -I/Library/Frameworks/Python.framework/Versions/3.7/include/python3.7m -c > lilcom/lilcom_extension.cc -o > build/temp.macosx-10.6-intel-3.7/lilcom/lilcom_extension.o -g -Wall > -UNDEBUG -Wno-c++11-compat-deprecated-writable-strings > clang: warning: include path for libstdc++ headers not found; pass > '-stdlib=libc++' on the command line to use the libc++ standard library > instead [-Wstdlibcxx-not-found] > clang: warning: include path for libstdc++ headers not found; pass > '-stdlib=libc++' on the command line to use the libc++ standard library > instead [-Wstdlibcxx-not-found] > In file included from lilcom/lilcom_extension.cc:15: > In file included from lilcom/compression.h:6: > lilcom/int_stream.h:7:10: fatal error: 'vector' file not found > #include > ^~~~~~~~ > 1 error generated. > error: command 'gcc' failed with exit status 1 > > gcc --version > Configured with: --prefix=/Library/Developer/CommandLineTools/usr > --with-gxx-include-dir=/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/4.2.1 > Apple clang version 12.0.0 (clang-1200.0.32.21) > Target: x86_64-apple-darwin19.4.0 > Thread model: posix > InstalledDir: /Library/Developer/CommandLineTools/usr/bin > > — > You are receiving this because you are subscribed to this thread. > Reply to this email directly, view it on GitHub > <#29>, or unsubscribe > <https://github.com/notifications/unsubscribe-auth/AAZFLO3UOR3DSXFQ3XJ6JFLSYLZQDANCNFSM4VU5CS2A> > . >

Answer 3 · 2021-01-05T11:46:34.000Z

Likely problem is that /Users/wuxb/Library/Python/3.7/lib is owned by root and not readable by you because you made the same mistake before, using sudo when you should not.

Answer 4 · 2021-01-05T12:18:21.000Z

chown -R your_username /Users/wuxb/Library/Python/3.7
may help

Answer 5 · 2021-01-06T07:49:12.000Z

i use user_name

python3 setup.py install
running install
running bdist_egg
running egg_info
writing lilcom.egg-info/PKG-INFO
writing dependency_links to lilcom.egg-info/dependency_links.txt
writing requirements to lilcom.egg-info/requires.txt
writing top-level names to lilcom.egg-info/top_level.txt
reading manifest file 'lilcom.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'lilcom.egg-info/SOURCES.txt'
installing library code to build/bdist.macosx-10.6-intel/egg
running install_lib
running build_py
running build_ext
building 'lilcom.lilcom_extension' extension
gcc -fno-strict-aliasing -Wsign-compare -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -arch i386 -arch x86_64 -g -I/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/core/include -I/Library/Frameworks/Python.framework/Versions/3.7/include/python3.7m -c lilcom/lilcom_extension.cc -o build/temp.macosx-10.6-intel-3.7/lilcom/lilcom_extension.o -g -Wall -UNDEBUG -Wno-c++11-compat-deprecated-writable-strings
clang: warning: include path for libstdc++ headers not found; pass '-stdlib=libc++' on the command line to use the libc++ standard library instead [-Wstdlibcxx-not-found]
clang: warning: include path for libstdc++ headers not found; pass '-stdlib=libc++' on the command line to use the libc++ standard library instead [-Wstdlibcxx-not-found]
In file included from lilcom/lilcom_extension.cc:15:
In file included from lilcom/compression.h:6:
lilcom/int_stream.h:7:10: fatal error: 'vector' file not found
#include
^~~~~~~~
1 error generated.
error: command 'gcc' failed with exit status 1
@danpovey Daniel Povey

Answer 6 · 2021-01-06T07:49:53.000Z

i use root user ,some error
wuxb@wuxbdeMacBook-Pro lilcom % sudo python3 setup.py install
running install
running bdist_egg
running egg_info
writing lilcom.egg-info/PKG-INFO
writing dependency_links to lilcom.egg-info/dependency_links.txt
writing requirements to lilcom.egg-info/requires.txt
writing top-level names to lilcom.egg-info/top_level.txt
reading manifest file 'lilcom.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'lilcom.egg-info/SOURCES.txt'
installing library code to build/bdist.macosx-10.6-intel/egg
running install_lib
running build_py
running build_ext
building 'lilcom.lilcom_extension' extension
gcc -fno-strict-aliasing -Wsign-compare -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -arch i386 -arch x86_64 -g -I/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/core/include -I/Library/Frameworks/Python.framework/Versions/3.7/include/python3.7m -c lilcom/lilcom_extension.cc -o build/temp.macosx-10.6-intel-3.7/lilcom/lilcom_extension.o -g -Wall -UNDEBUG -Wno-c++11-compat-deprecated-writable-strings
clang: warning: include path for libstdc++ headers not found; pass '-stdlib=libc++' on the command line to use the libc++ standard library instead [-Wstdlibcxx-not-found]
clang: warning: include path for libstdc++ headers not found; pass '-stdlib=libc++' on the command line to use the libc++ standard library instead [-Wstdlibcxx-not-found]
In file included from lilcom/lilcom_extension.cc:15:
In file included from lilcom/compression.h:6:
lilcom/int_stream.h:7:10: fatal error: 'vector' file not found
#include
^~~~~~~~
1 error generated.
error: command 'gcc' failed with exit status 1
@danpovey

Answer 7 · 2021-01-06T07:55:14.000Z

@danpovey I user pip3 install lilcom ,then some error.
Looking in indexes: http://mirrors.aliyun.com/pypi/simple/
Collecting lilcom
WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ReadTimeoutError("HTTPConnectionPool(host='mirrors.aliyun.com', port=80): Read timed out. (read timeout=15)")': /pypi/simple/lilcom/
Downloading http://mirrors.aliyun.com/pypi/packages/46/78/9605e17af46a789747544c66f69bcfba17d43ae12f7caeb82f10bbd3fbd5/lilcom-1.1.1.tar.gz
Requirement already satisfied: numpy in /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages (from lilcom) (1.19.4)
Building wheels for collected packages: lilcom
Building wheel for lilcom (setup.py) ... error
ERROR: Command errored out with exit status 1:
command: /Library/Frameworks/Python.framework/Versions/3.7/bin/python3.7 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/y0/dntzz2g93b54yr3c200ccvy80000gn/T/pip-install-iwwzc8br/lilcom/setup.py'"'"'; file='"'"'/private/var/folders/y0/dntzz2g93b54yr3c200ccvy80000gn/T/pip-install-iwwzc8br/lilcom/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' bdist_wheel -d /private/var/folders/y0/dntzz2g93b54yr3c200ccvy80000gn/T/pip-wheel-9of2btyw --python-tag cp37
cwd: /private/var/folders/y0/dntzz2g93b54yr3c200ccvy80000gn/T/pip-install-iwwzc8br/lilcom/
Complete output (22 lines):
running bdist_wheel
running build
running build_py
creating build
creating build/lib.macosx-10.6-intel-3.7
creating build/lib.macosx-10.6-intel-3.7/lilcom
copying lilcom/lilcom_interface.py -> build/lib.macosx-10.6-intel-3.7/lilcom
copying lilcom/init.py -> build/lib.macosx-10.6-intel-3.7/lilcom
running build_ext
building 'lilcom.lilcom_extension' extension
creating build/temp.macosx-10.6-intel-3.7
creating build/temp.macosx-10.6-intel-3.7/lilcom
gcc -fno-strict-aliasing -Wsign-compare -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -arch i386 -arch x86_64 -g -I/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/core/include -I/Library/Frameworks/Python.framework/Versions/3.7/include/python3.7m -c lilcom/lilcom_extension.cc -o build/temp.macosx-10.6-intel-3.7/lilcom/lilcom_extension.o -g -Wall -UNDEBUG -Wno-c++11-compat-deprecated-writable-strings
clang: warning: include path for libstdc++ headers not found; pass '-stdlib=libc++' on the command line to use the libc++ standard library instead [-Wstdlibcxx-not-found]
clang: warning: include path for libstdc++ headers not found; pass '-stdlib=libc++' on the command line to use the libc++ standard library instead [-Wstdlibcxx-not-found]
In file included from lilcom/lilcom_extension.cc:15:
In file included from lilcom/compression.h:6:
lilcom/int_stream.h:6:10: fatal error: 'vector' file not found
#include
^~~~~~~~
1 error generated.
error: command 'gcc' failed with exit status 1

ERROR: Failed building wheel for lilcom
Running setup.py clean for lilcom
Failed to build lilcom
Installing collected packages: lilcom
Running setup.py install for lilcom ... error
ERROR: Command errored out with exit status 1:
command: /Library/Frameworks/Python.framework/Versions/3.7/bin/python3.7 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/y0/dntzz2g93b54yr3c200ccvy80000gn/T/pip-install-iwwzc8br/lilcom/setup.py'"'"'; file='"'"'/private/var/folders/y0/dntzz2g93b54yr3c200ccvy80000gn/T/pip-install-iwwzc8br/lilcom/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' install --record /private/var/folders/y0/dntzz2g93b54yr3c200ccvy80000gn/T/pip-record-uy9bpv7w/install-record.txt --single-version-externally-managed --compile
cwd: /private/var/folders/y0/dntzz2g93b54yr3c200ccvy80000gn/T/pip-install-iwwzc8br/lilcom/
Complete output (22 lines):
running install
running build
running build_py
creating build
creating build/lib.macosx-10.6-intel-3.7
creating build/lib.macosx-10.6-intel-3.7/lilcom
copying lilcom/lilcom_interface.py -> build/lib.macosx-10.6-intel-3.7/lilcom
copying lilcom/init.py -> build/lib.macosx-10.6-intel-3.7/lilcom
running build_ext
building 'lilcom.lilcom_extension' extension
creating build/temp.macosx-10.6-intel-3.7
creating build/temp.macosx-10.6-intel-3.7/lilcom
gcc -fno-strict-aliasing -Wsign-compare -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -arch i386 -arch x86_64 -g -I/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/core/include -I/Library/Frameworks/Python.framework/Versions/3.7/include/python3.7m -c lilcom/lilcom_extension.cc -o build/temp.macosx-10.6-intel-3.7/lilcom/lilcom_extension.o -g -Wall -UNDEBUG -Wno-c++11-compat-deprecated-writable-strings
clang: warning: include path for libstdc++ headers not found; pass '-stdlib=libc++' on the command line to use the libc++ standard library instead [-Wstdlibcxx-not-found]
clang: warning: include path for libstdc++ headers not found; pass '-stdlib=libc++' on the command line to use the libc++ standard library instead [-Wstdlibcxx-not-found]
In file included from lilcom/lilcom_extension.cc:15:
In file included from lilcom/compression.h:6:
lilcom/int_stream.h:6:10: fatal error: 'vector' file not found
#include
^~~~~~~~
1 error generated.
error: command 'gcc' failed with exit status 1
----------------------------------------
ERROR: Command errored out with exit status 1: /Library/Frameworks/Python.framework/Versions/3.7/bin/python3.7 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/y0/dntzz2g93b54yr3c200ccvy80000gn/T/pip-install-iwwzc8br/lilcom/setup.py'"'"'; file='"'"'/private/var/folders/y0/dntzz2g93b54yr3c200ccvy80000gn/T/pip-install-iwwzc8br/lilcom/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' install --record /private/var/folders/y0/dntzz2g93b54yr3c200ccvy80000gn/T/pip-record-uy9bpv7w/install-record.txt --single-version-externally-managed --compile Check the logs for full command output.

Answer 8 · 2021-01-06T07:57:55.000Z

I think you have ruined your mac installation by using 'sudo' when you shouldn't be using sudo. You may have to try to uninstall and reinstall some things, or change file ownership everywhere at the very least.

…

On Wed, Jan 6, 2021 at 3:55 PM wuxiaobo ***@***.***> wrote: @danpovey <https://github.com/danpovey> I user pip3 install lilcom ,then some error. Looking in indexes: http://mirrors.aliyun.com/pypi/simple/ Collecting lilcom WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ReadTimeoutError("HTTPConnectionPool(host='mirrors.aliyun.com', port=80): Read timed out. (read timeout=15)")': /pypi/simple/lilcom/ Downloading http://mirrors.aliyun.com/pypi/packages/46/78/9605e17af46a789747544c66f69bcfba17d43ae12f7caeb82f10bbd3fbd5/lilcom-1.1.1.tar.gz Requirement already satisfied: numpy in /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages (from lilcom) (1.19.4) Building wheels for collected packages: lilcom Building wheel for lilcom (setup.py) ... error ERROR: Command errored out with exit status 1: command: /Library/Frameworks/Python.framework/Versions/3.7/bin/python3.7 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/y0/dntzz2g93b54yr3c200ccvy80000gn/T/pip-install-iwwzc8br/lilcom/setup.py'"'"'; *file*='"'"'/private/var/folders/y0/dntzz2g93b54yr3c200ccvy80000gn/T/pip-install-iwwzc8br/lilcom/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(*file*);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, *file*, '"'"'exec'"'"'))' bdist_wheel -d /private/var/folders/y0/dntzz2g93b54yr3c200ccvy80000gn/T/pip-wheel-9of2btyw --python-tag cp37 cwd: /private/var/folders/y0/dntzz2g93b54yr3c200ccvy80000gn/T/pip-install-iwwzc8br/lilcom/ Complete output (22 lines): running bdist_wheel running build running build_py creating build creating build/lib.macosx-10.6-intel-3.7 creating build/lib.macosx-10.6-intel-3.7/lilcom copying lilcom/lilcom_interface.py -> build/lib.macosx-10.6-intel-3.7/lilcom copying lilcom/*init*.py -> build/lib.macosx-10.6-intel-3.7/lilcom running build_ext building 'lilcom.lilcom_extension' extension creating build/temp.macosx-10.6-intel-3.7 creating build/temp.macosx-10.6-intel-3.7/lilcom gcc -fno-strict-aliasing -Wsign-compare -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -arch i386 -arch x86_64 -g -I/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/core/include -I/Library/Frameworks/Python.framework/Versions/3.7/include/python3.7m -c lilcom/lilcom_extension.cc -o build/temp.macosx-10.6-intel-3.7/lilcom/lilcom_extension.o -g -Wall -UNDEBUG -Wno-c++11-compat-deprecated-writable-strings clang: warning: include path for libstdc++ headers not found; pass '-stdlib=libc++' on the command line to use the libc++ standard library instead [-Wstdlibcxx-not-found] clang: warning: include path for libstdc++ headers not found; pass '-stdlib=libc++' on the command line to use the libc++ standard library instead [-Wstdlibcxx-not-found] In file included from lilcom/lilcom_extension.cc:15: In file included from lilcom/compression.h:6: lilcom/int_stream.h:6:10: fatal error: 'vector' file not found #include ^~~~~~~~ 1 error generated. error: command 'gcc' failed with exit status 1 ERROR: Failed building wheel for lilcom Running setup.py clean for lilcom Failed to build lilcom Installing collected packages: lilcom Running setup.py install for lilcom ... error ERROR: Command errored out with exit status 1: command: /Library/Frameworks/Python.framework/Versions/3.7/bin/python3.7 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/y0/dntzz2g93b54yr3c200ccvy80000gn/T/pip-install-iwwzc8br/lilcom/setup.py'"'"'; *file*='"'"'/private/var/folders/y0/dntzz2g93b54yr3c200ccvy80000gn/T/pip-install-iwwzc8br/lilcom/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(*file*);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, *file*, '"'"'exec'"'"'))' install --record /private/var/folders/y0/dntzz2g93b54yr3c200ccvy80000gn/T/pip-record-uy9bpv7w/install-record.txt --single-version-externally-managed --compile cwd: /private/var/folders/y0/dntzz2g93b54yr3c200ccvy80000gn/T/pip-install-iwwzc8br/lilcom/ Complete output (22 lines): running install running build running build_py creating build creating build/lib.macosx-10.6-intel-3.7 creating build/lib.macosx-10.6-intel-3.7/lilcom copying lilcom/lilcom_interface.py -> build/lib.macosx-10.6-intel-3.7/lilcom copying lilcom/*init*.py -> build/lib.macosx-10.6-intel-3.7/lilcom running build_ext building 'lilcom.lilcom_extension' extension creating build/temp.macosx-10.6-intel-3.7 creating build/temp.macosx-10.6-intel-3.7/lilcom gcc -fno-strict-aliasing -Wsign-compare -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -arch i386 -arch x86_64 -g -I/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/core/include -I/Library/Frameworks/Python.framework/Versions/3.7/include/python3.7m -c lilcom/lilcom_extension.cc -o build/temp.macosx-10.6-intel-3.7/lilcom/lilcom_extension.o -g -Wall -UNDEBUG -Wno-c++11-compat-deprecated-writable-strings clang: warning: include path for libstdc++ headers not found; pass '-stdlib=libc++' on the command line to use the libc++ standard library instead [-Wstdlibcxx-not-found] clang: warning: include path for libstdc++ headers not found; pass '-stdlib=libc++' on the command line to use the libc++ standard library instead [-Wstdlibcxx-not-found] In file included from lilcom/lilcom_extension.cc:15: In file included from lilcom/compression.h:6: lilcom/int_stream.h:6:10: fatal error: 'vector' file not found #include ^~~~~~~~ 1 error generated. error: command 'gcc' failed with exit status 1 ---------------------------------------- ERROR: Command errored out with exit status 1: /Library/Frameworks/Python.framework/Versions/3.7/bin/python3.7 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/y0/dntzz2g93b54yr3c200ccvy80000gn/T/pip-install-iwwzc8br/lilcom/setup.py'"'"'; *file*='"'"'/private/var/folders/y0/dntzz2g93b54yr3c200ccvy80000gn/T/pip-install-iwwzc8br/lilcom/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(*file*);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, *file*, '"'"'exec'"'"'))' install --record /private/var/folders/y0/dntzz2g93b54yr3c200ccvy80000gn/T/pip-record-uy9bpv7w/install-record.txt --single-version-externally-managed --compile Check the logs for full command output. — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#29 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AAZFLO76E6KIFAUMP5MA4DDSYQJPDANCNFSM4VU5CS2A> .

Answer 9 · 2021-01-06T08:27:58.000Z

😭 you are sure?

Answer 10 · 2021-01-06T08:32:56.000Z

😭 you are sure?

Maybe you can verify it by installing some other packages, e.g., pip install kaldialign.
If it still fails, it's very likely that there are some problems with your mac.

Answer 11 · 2021-01-06T08:35:57.000Z

Also, can you compile a hello world c++ program?

Answer 12 · 2021-01-06T08:43:08.000Z

I'd try uninstalling and reinstalling XCode, if mac will let you.

…

On Wed, Jan 6, 2021 at 4:36 PM Fangjun Kuang ***@***.***> wrote: Also, can you compile a hello world c++ program? — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#29 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AAZFLO7SMRK4IDUPKYBFFWDSYQOH7ANCNFSM4VU5CS2A> .

Answer 13 · 2021-01-06T08:59:51.000Z

g++ helloworld.cpp -o helloworld
./helloworld
Hello, world!

Answer 14 · 2021-01-06T09:01:14.000Z

😭 you are sure?

Maybe you can verify it by installing some other packages, e.g., pip install kaldialign.
If it still fails, it's very likely that there are some problems with your mac.

pip3 install kaldialign
some error
ERROR: Command errored out with exit status 1:
command: /Library/Frameworks/Python.framework/Versions/3.7/bin/python3.7 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/y0/dntzz2g93b54yr3c200ccvy80000gn/T/pip-install-q6hfu333/kaldialign/setup.py'"'"'; file='"'"'/private/var/folders/y0/dntzz2g93b54yr3c200ccvy80000gn/T/pip-install-q6hfu333/kaldialign/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' install --record /private/var/folders/y0/dntzz2g93b54yr3c200ccvy80000gn/T/pip-record-5ic043ht/install-record.txt --single-version-externally-managed --compile
cwd: /private/var/folders/y0/dntzz2g93b54yr3c200ccvy80000gn/T/pip-install-q6hfu333/kaldialign/
Complete output (19 lines):
running install
running build
running build_py
creating build
creating build/lib.macosx-10.6-intel-3.7
creating build/lib.macosx-10.6-intel-3.7/extensions
copying extensions/init.py -> build/lib.macosx-10.6-intel-3.7/extensions
running build_ext
building 'kaldialign' extension
creating build/temp.macosx-10.6-intel-3.7
creating build/temp.macosx-10.6-intel-3.7/extensions
gcc -fno-strict-aliasing -Wsign-compare -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -arch i386 -arch x86_64 -g -I/private/var/folders/y0/dntzz2g93b54yr3c200ccvy80000gn/T/pip-install-q6hfu333/kaldialign/extensions -I/Library/Frameworks/Python.framework/Versions/3.7/include/python3.7m -c extensions/align.cpp -o build/temp.macosx-10.6-intel-3.7/extensions/align.o -std=c++11 -Wno-register -Wno-unused-function -Wno-unused-local-typedefs -funsigned-char -stdlib=libc++ -mmacosx-version-min=10.7
gcc -fno-strict-aliasing -Wsign-compare -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -arch i386 -arch x86_64 -g -I/private/var/folders/y0/dntzz2g93b54yr3c200ccvy80000gn/T/pip-install-q6hfu333/kaldialign/extensions -I/Library/Frameworks/Python.framework/Versions/3.7/include/python3.7m -c extensions/kaldi_align.cpp -o build/temp.macosx-10.6-intel-3.7/extensions/kaldi_align.o -std=c++11 -Wno-register -Wno-unused-function -Wno-unused-local-typedefs -funsigned-char -stdlib=libc++ -mmacosx-version-min=10.7
g++ -bundle -undefined dynamic_lookup -arch i386 -arch x86_64 -g build/temp.macosx-10.6-intel-3.7/extensions/align.o build/temp.macosx-10.6-intel-3.7/extensions/kaldi_align.o -o build/lib.macosx-10.6-intel-3.7/kaldialign.cpython-37m-darwin.so
clang: warning: libstdc++ is deprecated; move to libc++ with a minimum deployment target of OS X 10.9 [-Wdeprecated]
clang: warning: libstdc++ is deprecated; move to libc++ with a minimum deployment target of OS X 10.9 [-Wdeprecated]
ld: library not found for -lstdc++
clang: error: linker command failed with exit code 1 (use -v to see invocation)
error: command 'g++' failed with exit status 1

Answer 15 · 2021-01-06T09:01:43.000Z

Then can you create a virtual environment for python to install packages? For example, with https://virtualenv.pypa.io/en/latest/