Pinned Repositories
bactopia.github.io
Bactopia Documentation
bug_report_data
temp toy data for bug report
cegwas2
cegwas2-nf
GWA mapping with C. elegans
CENTIPEDE.tutorial
:bug: How to use CENTIPEDE to determine if a transcription factor is bound.
covid_NGS_data_sample
debug_data
Fuller_Lab_paper
Scripts/tutorial to reproduce data analysis for the genomics paper from the Fuller Lab
nextflow_cheatsheet
Tips for Nextflow and cheatsheet for channel operation
NGS_workshop
Made this for very beginners of next-generation sequencing and high performance computing cluster
danrlu's Repositories
danrlu/nextflow_cheatsheet
Tips for Nextflow and cheatsheet for channel operation
danrlu/Fuller_Lab_paper
Scripts/tutorial to reproduce data analysis for the genomics paper from the Fuller Lab
danrlu/NGS_workshop
Made this for very beginners of next-generation sequencing and high performance computing cluster
danrlu/bactopia.github.io
Bactopia Documentation
danrlu/bug_report_data
temp toy data for bug report
danrlu/cegwas2
danrlu/cegwas2-nf
GWA mapping with C. elegans
danrlu/CENTIPEDE.tutorial
:bug: How to use CENTIPEDE to determine if a transcription factor is bound.
danrlu/covid_NGS_data_sample
danrlu/debug_data
danrlu/covid_Tracker_Resources
danrlu/covidtracker_rejected_rescue
danrlu/czid-workflows
Portable WDL workflows for CZ ID production pipelines
danrlu/danrlu.github.io
danrlu/genome_prep
download and index genome for alignment and variant calling
danrlu/monkeypox
Nextstrain build for monkeypox virus
danrlu/ncov
Nextstrain build for novel coronavirus SARS-CoV-2
danrlu/ncov-ingest
A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV rebuilds.
danrlu/Nextflow_training
Code for Nextflow trau
danrlu/nf_poppunk_ska
danrlu/nf_qc
Quick QC and trim for raw sequencing reads
danrlu/pp-sketchlib
Library of sketching functions used by PopPUNK
danrlu/RNAseq_template
danrlu/test
danrlu/test2
danrlu/test3
danrlu/wi-gatk
The new GATK-based pipeline for wild isolate C. elegans strains
danrlu/wi-nf
danrlu/WI-Strain-Info