Pinned Repositories
2023_Talat_India-HWW
Data, code, and analyses for Talat & Blake et al. (2023). Microbiology Spectrum. PMID: 36786639.
2024_Fishbein_DeVeaux_Khanna_Cdiff_DefCom_Microbiome
Commensal-pathogen dynamics structure disease outcomes during Clostridioides difficile colonization
2024_Sb_Probiotics_CancerMicrobiome
R Script to analyze and visualize 16S amplicon data included in Gorushi, Wallace, and Prusa 2024
DOME
ICUSink
Scripts used for analysis in the ICU Sink project.
NICUExposome
Scripts for NICU Exposome manuscript
preclinAD_GutMicrobiomes
Analyses of stool microbiomes from preclinical Alzheimer disease cohorts
resAnnotator
resfams
Antibiotic Resistance annotation by profile Hidden Markov Models
spack-gdlab-repo
Dantas Lab's custom spack packages
The Dantas Lab's Repositories
dantaslab/resAnnotator
dantaslab/resfams
Antibiotic Resistance annotation by profile Hidden Markov Models
dantaslab/DOME
dantaslab/preclinAD_GutMicrobiomes
Analyses of stool microbiomes from preclinical Alzheimer disease cohorts
dantaslab/spack-gdlab-repo
Dantas Lab's custom spack packages
dantaslab/2023_Blake_TDase-HMM-mut
Data, code, and analyses for Blake et al. (2023). Commun Biol.
dantaslab/2023_Blake_TrEAT-PREVENT-TD
Data, code, and analyses for Blake, Schwartz, Paruthiyil et al. (2023). mBio. PMID: 38085102.
dantaslab/2023_Talat_India-HWW
Data, code, and analyses for Talat & Blake et al. (2023). Microbiology Spectrum. PMID: 36786639.
dantaslab/2024_Fishbein_DeVeaux_Khanna_Cdiff_DefCom_Microbiome
Commensal-pathogen dynamics structure disease outcomes during Clostridioides difficile colonization
dantaslab/2024_Sb_Probiotics_CancerMicrobiome
R Script to analyze and visualize 16S amplicon data included in Gorushi, Wallace, and Prusa 2024
dantaslab/ICUSink
Scripts used for analysis in the ICU Sink project.
dantaslab/ngs-scripts
Scripts to analyze high-throughput sequencing data
dantaslab/NICUExposome
Scripts for NICU Exposome manuscript
dantaslab/parfums
dantaslab/resfams_update
Update to resfams database
dantaslab/spack
A flexible package manager that supports multiple versions, configurations, platforms, and compilers.
dantaslab/.github
dantaslab/deconseq-multi
Modified Deconseq to utilize multiple threads