Pinned Repositories
agutils
miniscript utilities for Stardew Valley Farmtronics mod
cardpricer
Python program to fetch cheapest prices for a csv full of magic cards
cv
My academic Curriculum Vitae
ENMeval
:exclamation: This is a read-only mirror of the CRAN R package repository. ENMeval — Automated Runs and Evaluations of Ecological Niche Models
fasta-scripts
Some useful bash scripts for processing fasta files, especially from GenBank.
fastq-from-ITSx
These scripts allow ITSx to be used with fastq files, with minimal overhead.
pd_assemb
specificity
R package for calculating specificity in ecological data
specificity.shiny
Interactive Visualization for package `specificity`
specificity_builds
Pre-compiled builds for specificity R package
darcyj's Repositories
darcyj/specificity
R package for calculating specificity in ecological data
darcyj/fastq-from-ITSx
These scripts allow ITSx to be used with fastq files, with minimal overhead.
darcyj/cardpricer
Python program to fetch cheapest prices for a csv full of magic cards
darcyj/ENMeval
:exclamation: This is a read-only mirror of the CRAN R package repository. ENMeval — Automated Runs and Evaluations of Ecological Niche Models
darcyj/fasta-scripts
Some useful bash scripts for processing fasta files, especially from GenBank.
darcyj/pd_assemb
darcyj/specificity.shiny
Interactive Visualization for package `specificity`
darcyj/XtendR_Csharp
A program to extend contigs created from genome assembly. It will join contigs together, and also extend contigs using raw sequence data.
darcyj/agutils
miniscript utilities for Stardew Valley Farmtronics mod
darcyj/cv
My academic Curriculum Vitae
darcyj/specificity_builds
Pre-compiled builds for specificity R package
darcyj/boulder_housing
Analysis of housing cost in Boulder CO using data downloaded from Zillow.com
darcyj/combine_uc
Script to combine uc tables produced by dereplicating sequence reads and running unoise. This speeds up the process of creating a zOTU table using unoise.
darcyj/de_zoomify.r
Takes tiles generated by zoomify and re-constitutes them into full jpgs.
darcyj/fractalgen
A program to make fractals; see https://www.youtube.com/watch?v=kbKtFN71Lfs
darcyj/GarbageTree
A program to make de novo trees out of un-alignable sequence data.
darcyj/ghost-tree-unite7-silva128
A Ghost Tree for Fungal ITS using the most recent versions of the UNITE and SILVA databases
darcyj/lulu
r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)
darcyj/pdmodel_paper
darcyj/Point-Intercept-vs-FOV-simulation
A simulation written in R to determine the relationship between two methods of evaluating the coverage of microbial phototrophs in soil microcosm experiments.
darcyj/prime_minus_bin_rev
Computes the integer sequence "nth prime minus its binary reversal"
darcyj/remove-win10-bloat
darcyj/simplify_contigs.r
Simplifies output from genome/metagenome assembly by combining contigs with redundant regions
darcyj/specificity_analyses
Empirical data analysis for the specificity paper
darcyj/specificity_validation
Validation scripts for specificity R package
darcyj/split_libraries_dumb.r
Script to demultiplex illumina raw fastq files WITHOUT filtering