data2health/nlp-sandbox

Issues

• Evaluate the performance of Google de-id service for the date annotation task

  #64 opened 4 years ago by tschaffter
  3

• Review Amazon Comprehend Medical

  #38 opened 4 years ago by tschaffter
  3

• Review CLAMP

  #58 opened 4 years ago by tschaffter
  6

• Review EMERSE

  #56 opened 4 years ago by tschaffter
  4

• Create an OpenAPI spec for a Submission API

  #63 opened 4 years ago by tschaffter
  0

• Identify feasability of creating gold standard for date format in the 2014 i2b2 dataset

  #59 opened 4 years ago by tschaffter
  2

• Prepare codebase for evaluator

  #60 opened 4 years ago by tschaffter
  0

• Create initial codebase of the date annotator example

  #61 opened 4 years ago by tschaffter
  2

• Create a DB+API stack that exposes the i2b2 dataset

  #50 opened 4 years ago by tschaffter
  3

• Create example schema for PHI using JSON-LD

  #47 opened 4 years ago by tschaffter
  2

• Finalize Git workflow SOP

  #43 opened 4 years ago by tschaffter
  1

• Release NLP Sandbox Architecture: July Update

  #40 opened 4 years ago by tschaffter
  2

• Compile information about the NLP de-id methods submitted to the 2014 i2b2 challenge

  #31 opened 4 years ago by tschaffter
  3

• Remove unused GitHub repositories

  #51 opened 4 years ago by tschaffter
  3

• Review Google de-identification services

  #41 opened 4 years ago by tschaffter
  2

• Review two annotation tools used by Mayo Clinic

  #49 opened 4 years ago by tschaffter
  1

• Evaluate UCSF method on 2014 i2b2 challenge

  #32 opened 4 years ago by tschaffter
  1

• Map the 2014 i2b2 challenge annotations to our NLP data schema types

  #23 opened 4 years ago by tschaffter
  2

• Create slides that describes the three designs considered for submission infrastructure

  #62 opened 4 years ago by tschaffter
  0

• Advertise pre-registration to the NLP Sandbox

  #55 opened 4 years ago by tschaffter
  1

• Update MCW logo in the banner

  #57 opened 4 years ago by tschaffter
  1

• Is it possible to run Docker stack wither inter connectivity but no access to the Internet?

  #54 opened 4 years ago by tschaffter
  0

• Create document with specifications of the infrastructure

  #53 opened 4 years ago by tschaffter
  0

• Review Large Scale Ensembled NLP Systems with Docker and Kubernetes

  #52 opened 4 years ago by tschaffter
  0

• Complete introduction to JSON Schema

  #42 opened 4 years ago by tschaffter
  0

• Investigate NLM-Scrubber

  #37 opened 4 years ago by tschaffter
  3

• Upload processed i2b2 dataset to Synapse

  #48 opened 4 years ago by tschaffter
  1

• Create NLP DREAM Challenge project in Synapse

  #44 opened 4 years ago by tschaffter
  1

• Add schema validator tool

  #45 opened 4 years ago by tschaffter
  1

• Review NLP resources shared by Mayo Clinic

  #39 opened 4 years ago by tschaffter
  1

• Dockerize UCSF program

  #34 opened 5 years ago by tschaffter
  1

• Add support for HTTPS to MCW web app

  #35 opened 4 years ago by tschaffter
  2

• Fix performance issue of MCW web app

  #36 opened 4 years ago by tschaffter
  2

• Investigating the possibility to come up with a POC in five weeks

  #29 opened 5 years ago by tschaffter
  1

• Clarify date and dedliverables for end of Phase III

  #30 opened 5 years ago by tschaffter
  1

• Create NLP Sandbox Portal strawman

  #33 opened 4 years ago by tschaffter
  1

• Deploy UCSF De-ID tool to NCATS

  #28 opened 5 years ago by tschaffter
  1

• Define data schema for annotating NLP de-id datasets

  #25 opened 4 years ago by tschaffter
  1

• Update MCW method so that it uses the NLP de-id data schema

  #26 opened 4 years ago by tschaffter
  1

• Update MCW method so that it uses the NLP de-id API

  #27 opened 4 years ago by tschaffter
  1

• Access iEC Virtual Meeting recording

  #19 opened 5 years ago by tschaffter
  1

• Dockerizing deid-mcw-service

  #20 opened 5 years ago by tschaffter
  1

• Evaluate mcw de-identification x2 method on 2014 i2b2 de-identification challenge dataset

  #21 opened 5 years ago by yy6linda
  1

• Evaluate MCW method on 2014 i2b2 challenge dataset

  #22 opened 4 years ago by tschaffter
  3

• Define NLP De-id API

  #24 opened 4 years ago by tschaffter
  3

• Draft SOP

  #17 opened 4 years ago by tschaffter
  3

• Define primary and secondary scoring metrics

  #16 opened 5 years ago by tschaffter
  3

• Define scope of NLP deid methods

  #18 opened 5 years ago by tschaffter
  1

• Catalog public and private datasets for NLP methods

  #14 opened 5 years ago by tschaffter
  4

• Get access to NCATS resources

  #15 opened 5 years ago by tschaffter
  3