examples should auto-populate their reference genomes
Closed this issue · 4 comments
we can't run an hg19 sample on an mm10 database.
2 solutions: when you choose a sample, it populates the appropriate genome; or
when you pick a genome, it restricts the dropdown to samples for that genome.
I've started to implement these but reached my limit as I don't know how to find the input variable. @vpnagraj ?
i started on this went with option two:
when you pick a genome, it restricts the dropdown to samples for that genome
that seems to be working (in the sense that i can see the 2 bed files in hg19/ when i select hg19) ... but when i try to run a job i'm getting an error
@nsheff can you double check the permissions on those example files? maybe similar to what we were seeing in #50 yesterday?
also wondering if we will have example usersets for all of the reference genomes?
Yep, permissions fixed it.
That is great, thanks. This works.
I'll make sure to add examples for all of the reference genomes.
@nsheff have you successfully completed a run with either of the example user sets?
i see that they load and start processing but i get disconnected at the end (when the cache is being created)
maybe also related to discussion in #50 and how the cache dir is being mounted on containers? is shiny not able to write to that location?