Documentation of the key method to implement to create a Pipeline type is wrong

Question

Opened this issue a year ago · 1 comments

Pipeline.stages suggests a collection of names, rather than callables, Stage instances, or the like.

Answer 1 · 2023-07-06T15:51:29.000Z

It seems to need to be a collection of pairs of name and callable, or name and Stage (or a mapping from name to callable or stage): https://github.com/databio/pypiper/blob/master/pypiper/pipeline.py#L115-L122