Pinned Repositories
aBayesQR
algorithm-performance-analysis
ansible-galaxy-extras
Ansible roles to configure assorted compontents for an Ubuntu VM or container configured with https://github.com/galaxyproject/ansible-galaxy with production services including nginx, uwsgi, supervisor, protftp, and slurm.
ARTDeco
bellerophon
Filter mapped reads where the mapping spans a junction, retaining the 5-prime read.
bioblend
A python library for interacting with CloudMan and Galaxy API
bioconda-recipes
Conda recipes for the bioconda channel.
FASTK
A fast K-mer counter for high-fidelity shotgun datasets
kc-align
Codon-aware aligner
tools-iuc
Tool Shed repositories maintained and developed by the Intergalactic Utilities Commission
davebx's Repositories
davebx/kc-align
Codon-aware aligner
davebx/FASTK
A fast K-mer counter for high-fidelity shotgun datasets
davebx/tools-iuc
Tool Shed repositories maintained and developed by the Intergalactic Utilities Commission
davebx/ARTDeco
davebx/bellerophon
Filter mapped reads where the mapping spans a junction, retaining the 5-prime read.
davebx/bioblend
A python library for interacting with CloudMan and Galaxy API
davebx/bioconda-recipes
Conda recipes for the bioconda channel.
davebx/bioconda-utils
Utilities for building and managing bioconda recipes
davebx/BioExt
A few handy bioinformatics tools not already within BioPython
davebx/convex-qsr
Viral quasispecies reconstruction using convex optimization
davebx/fluid-player
Fluid Player - an open source VAST compliant HTML5 video player
davebx/galaxy
Data intensive biology for everyone.
davebx/galaxyproject-sqlite
SQLite templates for galaxy databases.
davebx/galaxytools
Galaxy Tool wrappers
davebx/hyphy
HyPhy: Hypothesis testing using Phylogenies
davebx/iqtree2
NEW location of IQ-TREE software for efficient phylogenomic software by maximum likelihood http://www.iqtree.org
davebx/kalign
A fast multiple sequence alignment program.
davebx/mapping_pipeline
Mapping pipeline for data generated using Arima-HiC
davebx/MotifBinner2
davebx/openjdk-feedstock
A conda-smithy repository for openjdk.
davebx/pipelign
davebx/RagTag
Tools for fast and flexible genome assembly scaffolding and improvement
davebx/RASCL
davebx/SARS-CoV-2
Daily analyses of genomic SARS-CoV-2 data
davebx/springsuite
davebx/telescope
Quantification of transposable element expression using RNA-seq
davebx/tn93
TN93 fast distance calculator
davebx/toolshed
davebx/training-material
A collection of Galaxy-related training material
davebx/usegalaxy-tools
usegalaxy.* common tools