Hopelessly hardcoded paths
davemcg opened this issue · 0 comments
davemcg commented
The snakefile/scripts are heavily hardcoded in two ways:
- scripts are assumed to be in ~/git/massive_integrated_eye_scRNA/src/
- the working dir is occasionally hardcoded (in those above scripts mostly) to be in /data/OGVFB_BG/scEiaD
Will be difficult for @vinay-swamy to work with this without restructuring.