davidaknowles

dox

Determining the genetic basis of anthracycline-cardiotoxicity by molecular response QTL mapping in induced cardiomyocytes

dpvc

Dirichlet Process Variable Clustering

eagle

An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified from RNA-seq

gamma_sgvb

gprn

Gaussian Process Regression Network code

leafcutter

Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae Kyung Im, Jonathan K. Pritchard

pydt

Pitman Yor diffusion tree sampler

suez

R package for mapping response-expression QTLs

tensor_gp

Code for Tensor Gaussian Process Regression for predicting drug combination synergy, developed for the AstraZeneca-Sanger Drug Combination Prediction DREAM Challenge 2015: https://www.synapse.org/#!Synapse:syn4231880/wiki/235645

tf_net

A custom conv net for the DREAM ENCODE challenge

davidaknowles/gprn

Gaussian Process Regression Network code

davidaknowles/tf_net

A custom conv net for the DREAM ENCODE challenge

davidaknowles/dox

Determining the genetic basis of anthracycline-cardiotoxicity by molecular response QTL mapping in induced cardiomyocytes

davidaknowles/tensor_gp

Code for Tensor Gaussian Process Regression for predicting drug combination synergy, developed for the AstraZeneca-Sanger Drug Combination Prediction DREAM Challenge 2015: https://www.synapse.org/#!Synapse:syn4231880/wiki/235645

davidaknowles/gamma_sgvb

davidaknowles/dpvc

Dirichlet Process Variable Clustering

davidaknowles/epidiff

davidaknowles/nsfa

Nonparametric Bayesian Sparse Factor Analysis

davidaknowles/cluster_expression

Code to cluster genes based on expression probabilities from DESeq2 using a beta mixture model.

davidaknowles/dplyr

dplyr: A grammar of data manipulation

davidaknowles/edward_BetaBinomial

Beta binomial likelihood for Edward

davidaknowles/kbroman.github.io

Karl Broman's website

davidaknowles/lc_conda

davidaknowles/leafcutter_conda

davidaknowles/LOBICO

Fork of LOBICO with some installation details

davidaknowles/pivus

davidaknowles/sasquat

Spike-And-Slab QUick-And-Tricky

davidaknowles/sherlock-notes

davidaknowles/singleCellSeq

davidaknowles/Surprise

A Python scikit for building and analyzing recommender systems

davidaknowles/tf_unet

Generic U-Net Tensorflow implementation for image segmentation

davidaknowles/xaringan_bib

Proof of concept for printing bibtex references in Xaringan