Electronic supplementary material for:
Intrinsic and realized generation intervals in infectious-disease transmission. David Champredon and Jonathan Dushoff. Proceedings of the Royal Society of London. Series B: Biological Sciences. Vol-XXX pages XXX-XXX
Please acknowledge the reference above if you use any part of the code deposited here.
Instructions for Unix-like operating systems
Manuscript figures:
To reproduce the figures in the manuscript, go to the Rscript directory and execute from the command line: make allfig.out
Animation:
To reproduce the animation in from the online supplementary material, go to the Rscript/animation directory and execute from the command line: make animation