davidcoffey
As a physician/scientist, I study the tumor biology and immune microenvironment in patients with multiple myeloma, a cancer of bone marrow plasma cells.
University of MiamiMiami, FL
Pinned Repositories
LymphoSeq
This R package analyzes high-throughput sequencing of T and B cell receptor complementarity determining region 3 (CDR3) sequences generated by Adaptive Biotechnologies' ImmunoSEQ assay
LymphoSeqDB
This package provides annotation databases that support the package LymphoSeq.
TCellPack
TCellPack is a package used to visualize characteristics of T cell repertoires. It is possible to visualize T cell clonotype diversity and abundance in relation to its antigen specificity and phenotype in a single plot.
explore-libraries-seattle-practice
Just practicing!
Genomic-and-immune-signatures-predict-clinical-outcome-in-newly-diagnosed-myeloma
Code for defining malignant plasma cells using copy number variation in single cell RNA sequencing and performing the RNAseq pathway enrichment analysis.
Immunophenotypic-correlates-of-sustained-MRD-negativity
Immunophenotypic correlates of sustained MRD negativity in patients with multiple myeloma
explore-libraries
Just practicing
davidcoffey's Repositories
davidcoffey/TCellPack
TCellPack is a package used to visualize characteristics of T cell repertoires. It is possible to visualize T cell clonotype diversity and abundance in relation to its antigen specificity and phenotype in a single plot.
davidcoffey/LymphoSeq
This R package analyzes high-throughput sequencing of T and B cell receptor complementarity determining region 3 (CDR3) sequences generated by Adaptive Biotechnologies' ImmunoSEQ assay
davidcoffey/LymphoSeqDB
This package provides annotation databases that support the package LymphoSeq.