davidenoma

Disease_subsetting

Colorectal cancer CMs subtyping and personalized medication recommendation based on RNA seq pathway analysis

CarRecommenderSystem

Recommender system that uses naive bayes classifier to analyse comments on different cars for the sentiments. It employes data mining techniques and an ontology preprocessing to see the effects on the recommendation.

knuth-differential-expression-TNBC

Differential Expression Analysis of Triple Negative Breast cancer gene expression data between African American and Caucasian Subjects

Machine_Learning_GWAS

Traditional machine learning algorithms on some genotype and phenotype files

pheno-by-geno-l1-and-l2

Predicting phenotype by genotype: a comparison of lasso and ridge regularized regression

R-Language-scripts

Comprehensive collection of scripts and pipelines in R for Bioinformatics & general use. Includes, R fundamentals, bayesian statistics, cancer genomics, data analysis, genomic analysis and targeted SNP analyses.

Restful-Explore-California-App

A restful spring boot micro service based on spring data JPA and spring rest. It allows requests to the web service that returns information about tours, tour packages and tour ratings about locations in california.

web-scrape-SEC-fillings

Webscrape the EDGAR database for form 4 fillings and compare with historical stock prices

xMLGenoRisk

Machine Learning approach for genetic risk prediction. I applied a modified, XGBoost algorithm and an iterative SNP selection algorithm to find the top features (SNPs) that best predict the risk of developing prostate cancer with a linear Support Vector Machine (SVM).

Challenge-1-London-Team-B-Genome-Wide-Association-Lovers-

We suggest a novel way of defining NCD as a continuous phenotype, and we employ a mixed linear model to account for pronounced population stratification in the South Asian sample, which is more diverse than European samples, for example.

davidenoma/R-Language-scripts

Comprehensive collection of scripts and pipelines in R for Bioinformatics & general use. Includes, R fundamentals, bayesian statistics, cancer genomics, data analysis, genomic analysis and targeted SNP analyses.

davidenoma/xMLGenoRisk

Machine Learning approach for genetic risk prediction. I applied a modified, XGBoost algorithm and an iterative SNP selection algorithm to find the top features (SNPs) that best predict the risk of developing prostate cancer with a linear Support Vector Machine (SVM).

davidenoma/knuth-differential-expression-TNBC

Differential Expression Analysis of Triple Negative Breast cancer gene expression data between African American and Caucasian Subjects

davidenoma/Machine_Learning_GWAS

Traditional machine learning algorithms on some genotype and phenotype files

davidenoma/pheno-by-geno-l1-and-l2

Predicting phenotype by genotype: a comparison of lasso and ridge regularized regression

davidenoma/web-scrape-SEC-fillings

Webscrape the EDGAR database for form 4 fillings and compare with historical stock prices

davidenoma/dl_geno

davidenoma/ensemble-learning-GWAS

Application of Two Ensemble Learning Methods to GWAS Data

davidenoma/PRS_reporting

Clinical Reporting of Polygenic Risk Scores

davidenoma/Cancer-Health-Disparities-through-genomic-epidemiology-Lens

davidenoma/active-edge-test

Developer test result

davidenoma/bare

davidenoma/boltzmann-machines

Boltzmann Machines in TensorFlow with examples

davidenoma/cancer_related_pathways

davidenoma/DataStructuresAlgorithm

Data structures and algorithms in python as well as numpy and pandas fundamentals

davidenoma/davidenoma

Config files for my GitHub profile.

davidenoma/Enhancing-the-capacity-of-variant-effect-prediction-a-multidisciplinary-application

davidenoma/FeatureImportanceDL

davidenoma/Hackbio-Thanos

Punishment for breaking the rules :'(

davidenoma/laravelblog

A simple implementation of the basics of laravel include layouts, routes, views, authentication and other features

davidenoma/LiftOver

Liftover genotype files from different builds for Plink formatted genotype files.

davidenoma/liftOverPlink

A wrapper for liftOver for converting plink genotype data between different genome reference builds

davidenoma/livenormad

davidenoma/nexgizmo_backend

Laravel Backend implementation for nexgizmo

davidenoma/nomatech_site

davidenoma/Restricted-Boltzmann-Machines

Implementation of restricted Boltzmann machines in Tensorflow 2

davidenoma/rvTWAS

Rare variant TWAS

davidenoma/thanos-hackbio

Quarantine in hackbio internship

davidenoma/Variational-Autoencoders

Beta-VAE, Conditional-VAE, Total Correlation-VAE, FactorVAE, Relevance Factor-VAE, Multi-Level VAE, (Soft)-IntroVAE (Beta-Version), LVAE, VLAE, VaDE and MFCVAE implemented in Tensorflow 2

davidenoma/xgboost-hyperparameter-optimization

Python Scripts for Hyperparameter optimization for the extrememe gradient boosting model