Pinned Repositories
BGI_vs_Illumina_Benchmark
This repository contains code related to the publication "Comparative performance of the BGI and Illumina sequencing technology for single-cell RNA-sequencing" by Senabouth et al.
CEL-Seq-pipeline
cNMF
Code and example data for funning Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data
CompClub-sklearn
Intro to sklearn for Comp Club
daqface
A high-level python interface for a number of common NI DAQmx hardware tasks.
FeatureSelectionGA
Feature Selection using Genetic Algorithm (DEAP Framework)
full-FORCE-demos
Simulations illustrating the results of full-FORCE.
init-scripts
jackstraw
implements jackstraw methods in python test for associations between variables and systematic modes of variation discovered in the data.
kb_python
A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing
davidhbrann's Repositories
davidhbrann/CompClub-sklearn
Intro to sklearn for Comp Club
davidhbrann/full-FORCE-demos
Simulations illustrating the results of full-FORCE.
davidhbrann/BGI_vs_Illumina_Benchmark
This repository contains code related to the publication "Comparative performance of the BGI and Illumina sequencing technology for single-cell RNA-sequencing" by Senabouth et al.
davidhbrann/CEL-Seq-pipeline
davidhbrann/cNMF
Code and example data for funning Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data
davidhbrann/daqface
A high-level python interface for a number of common NI DAQmx hardware tasks.
davidhbrann/FeatureSelectionGA
Feature Selection using Genetic Algorithm (DEAP Framework)
davidhbrann/init-scripts
davidhbrann/jackstraw
implements jackstraw methods in python test for associations between variables and systematic modes of variation discovered in the data.
davidhbrann/kb_python
A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing
davidhbrann/odor_scripts
davidhbrann/PulseBoy
GUI tool for controlling NI pulse trains
davidhbrann/pybasicbayes
davidhbrann/pyGenomeTracks
python module to plot beautiful and highly customizable genome browser tracks
davidhbrann/pyhsmm
davidhbrann/pypulse
A set of tools for generating complex pulse trains for digital inputs, largely for use in driving high speed valves / PWM.
davidhbrann/SBA-PPP-Loan-Data
SBA Paycheck Protection Program Loan Level Data from https://home.treasury.gov/policy-issues/cares-act/assistance-for-small-businesses/sba-paycheck-protection-program-loan-level-data
davidhbrann/scanpy
Single-Cell Analysis in Python. Scales to >1M cells.
davidhbrann/scrublet
Detect doublets in single-cell RNA-seq data
davidhbrann/starfish
starfish: unified pipelines for image-based transcriptomics
davidhbrann/suite2p
cell detection in calcium imaging recordings
davidhbrann/UMI-tools
Tools for handling Unique Molecular Identifiers in NGS data sets