Pinned Repositories
autoencoded-vocal-analysis
Learn acoustic features with variational autoencoders
beautiful-jekyll
✨ Build a beautiful and simple website in literally minutes. Demo at https://beautifuljekyll.com
bigwarp
A tool for manual pointwise deformable registration using bigdataviewer.
CaImAn
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
CATMAID
Collaborative Annotation Toolkit for Massive Amounts of Image Data
hildebrand16
hildebrand16_web
ISI
Code for ISI image acquisition, stimulus presentation, and mouse visual area segmentation.
Vivaldi_public
XINTRINSIC
cross-linear (X) polarization enhanced INTRINSIC imaging
davidhildebrand's Repositories
davidhildebrand/CATMAID
Collaborative Annotation Toolkit for Massive Amounts of Image Data
davidhildebrand/hildebrand16
davidhildebrand/XINTRINSIC
cross-linear (X) polarization enhanced INTRINSIC imaging
davidhildebrand/autoencoded-vocal-analysis
Learn acoustic features with variational autoencoders
davidhildebrand/beautiful-jekyll
✨ Build a beautiful and simple website in literally minutes. Demo at https://beautifuljekyll.com
davidhildebrand/CaImAn
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
davidhildebrand/CaImAn-MATLAB
Complete Matlab pipeline for large scale calcium imaging data analysis
davidhildebrand/CCN_caiman_mesmerize_workshop_2023
Repo for CCN workshop on caiman and mesmerize in January 2023
davidhildebrand/ChKshared
davidhildebrand/eyeloop
EyeLoop is a Python 3-based eye-tracker tailored specifically to dynamic, closed-loop experiments on consumer-grade hardware.
davidhildebrand/fiji
Fiji Is Just ImageJ
davidhildebrand/fluffy-goggles
davidhildebrand/gt_pickup_annotation
Annotate relative position of section to slot from staining/pickup images
davidhildebrand/MARIPETS
davidhildebrand/mattermost-server
Open source Slack-alternative in Golang and React - Mattermost
davidhildebrand/mesmerize-core
High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
davidhildebrand/MultiCamSelfCal
multiple camera self calibration Toolbox
davidhildebrand/occupancy_networks
This repository contains the code for the paper "Occupancy Networks - Learning 3D Reconstruction in Function Space"
davidhildebrand/oculomatic-release
High Speed Eye Tracking for Point Gray USB3.0 Cameras
davidhildebrand/PHATE
PHATE (Potential of Heat-diffusion for Affinity-based Transition Embedding) is a tool for visualizing high dimensional data.
davidhildebrand/psychopy
For running psychology and neuroscience experiments
davidhildebrand/rotki
A portfolio tracking, analytics, accounting and tax reporting application that respects your privacy
davidhildebrand/seqNMF
An algorithm for unsupervised discovery of sequential structure
davidhildebrand/SouthwestCheckin
🛫 Python script to checkin to a Southwest Flight 🛬
davidhildebrand/STNeuroNet
Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," (IN PRESS) Proceedings of the National Academy of Sciences (PNAS), 2019.
davidhildebrand/suite2p
cell detection in calcium imaging recordings
davidhildebrand/SyncMessCleaner
Python program to clean the mess you and or Syncthing may have accidentally created
davidhildebrand/thewarden
Open Source Portfolio Tracker for Bitcoin
davidhildebrand/TrakEM2
ImageJ plugin for morphological data mining, 3D modeling and image stitching, registration, editing and annotation.
davidhildebrand/VAME
Variational Animal Motion Embedding