davidkartchner
I'm a Postdoctoral Researcher at Truveta. My research uses LLMs to extract, normalize, and structure data for clinical and biomedical domains.
@truvetaSeattle, WA, USA
Pinned Repositories
biomedical
Tools for curating biomedical training data for large-scale language modeling
Ab3P
Abbreviation definition dection library trained on PubMed abstracts
ai-deadlines
:alarm_clock: AI conference deadline countdowns
arboel
Entity Linking & Discovery solution
biomedical
Tools for curating biomedical training data for large-scale language modeling
biomedical-entity-linking
regal
Rule-Guided Active Learning
biosift
Dataset for document filtering for drug repurposing meta-analysis
regal
Interactive Weak Supervision with Transformers
semnet
davidkartchner's Repositories
davidkartchner/biomedical-entity-linking
davidkartchner/arboel
Entity Linking & Discovery solution
davidkartchner/regal
Rule-Guided Active Learning
davidkartchner/Ab3P
Abbreviation definition dection library trained on PubMed abstracts
davidkartchner/ai-deadlines
:alarm_clock: AI conference deadline countdowns
davidkartchner/biomedical
Tools for curating biomedical training data for large-scale language modeling
davidkartchner/caml-mimic
multilabel classification of EHR notes
davidkartchner/davidkartchner
davidkartchner/ForwardThinking
Companion code for <<Paper 1>> and <<Paper 2>> submitted to NIPS 2017
davidkartchner/MachineLearningProjects
Tutorials, Class Projects, Thesis, etc. involving data science, machine learning, and neural networks
davidkartchner/davidkartchner.github.io
davidkartchner/fredhohman.github.io
davidkartchner/GenBioEL
Generative Biomedical Entity Linking via Knowledge Base-Guided Pre-training and Synonyms-Aware Fine-tuning[NAACL 2022]
davidkartchner/hornet
Hornet data structure for sparse dynamic graphs and matrices
davidkartchner/hpc
davidkartchner/hugo-academic-resume
davidkartchner/List-of-US-States
List of US States in various Rails friendly formats
davidkartchner/MedLinker
ECIR 2020 - MedLinker: Medical Entity Linking with Neural Representations and Dictionary Matching
davidkartchner/NCBITextLib
Software library for building a large-scale data infrastructure for text mining
davidkartchner/neo4j_covid19_update
davidkartchner/neo4j_data
davidkartchner/PPRcorpus
PPR corpus for biomedical relationships between plants and phenotypes
davidkartchner/pyHGT
Pytorch Code for WWW'20 "Heterogeneous Graph Transformer", which is based on pytorch_geometric
davidkartchner/rnn_utils
API for Healthcare RNN
davidkartchner/rubrix
✨ Python framework for data-centric NLP
davidkartchner/sapbert
[NAACL & ACL 2021] SapBERT: Self-alignment pretraining for BERT & XL-BEL: Cross-Lingual Biomedical Entity Linking.
davidkartchner/scibert
A BERT model for scientific text.
davidkartchner/smurff
Bayesian Factorization with Side Information in C++ with Python wrapper
davidkartchner/soda-json-temp
davidkartchner/starter-hugo-academic