davidrequena
Senior Bioinformatician. Head of @BigMindLab. President of the Peruvian Society for Bioinformatics and Computational Biology @SociedadPeruanaBioinformatica
@mskilab-org NYU & New York Genome CenterNew York, USA
Pinned Repositories
DESeq2
Guide for the Differential Expression Analysis of RNAseq data using DESeq2
DESeq2_basic
Basic Guide for the Differential Expression Analysis of RNAseq data using DESeq2
DRnaSeq
Functions to help with RNA-seq Data Analysis
edgeR
Guide for the Differential Expression Analysis of RNAseq data using edgeR
limma
Guide for the Differential Expression Analysis of RNAseq data using limma
multifastats
Multifastats: Multi-Fasta Sequence Stats. Free python-based program that, from a set of a set of 'fasta' sequences (as group or individually), produces basic outputs and statistics (N50, %GC, molecular weight, cut in kmers and concatenate sequences using defined spacers). And also allows to apply some filters and select subgroups by length and/or type. This runs in Windows, Linux and Mac OS.
search_pubmed_entrez
Searches for articles in PubMed using an user input (allows field tags). And outputs an Excel table with the results.
search_pubmed_pymed
Searches for articles in PubMed using an user input, and outputs an Excel table with the results.
split_equal_sum
To split a set of groups with different number of elements into subsets (buckets) of nearly equal sum through a random iterative minimization.
COVID_19_PERU
Intento de armar un handbook para centralizar información e iniciativas sobre el COVID-19
davidrequena's Repositories
davidrequena/DESeq2
Guide for the Differential Expression Analysis of RNAseq data using DESeq2
davidrequena/multifastats
Multifastats: Multi-Fasta Sequence Stats. Free python-based program that, from a set of a set of 'fasta' sequences (as group or individually), produces basic outputs and statistics (N50, %GC, molecular weight, cut in kmers and concatenate sequences using defined spacers). And also allows to apply some filters and select subgroups by length and/or type. This runs in Windows, Linux and Mac OS.
davidrequena/search_pubmed_pymed
Searches for articles in PubMed using an user input, and outputs an Excel table with the results.
davidrequena/DESeq2_basic
Basic Guide for the Differential Expression Analysis of RNAseq data using DESeq2
davidrequena/search_pubmed_entrez
Searches for articles in PubMed using an user input (allows field tags). And outputs an Excel table with the results.
davidrequena/split_equal_sum
To split a set of groups with different number of elements into subsets (buckets) of nearly equal sum through a random iterative minimization.
davidrequena/DRnaSeq
Functions to help with RNA-seq Data Analysis
davidrequena/edgeR
Guide for the Differential Expression Analysis of RNAseq data using edgeR
davidrequena/limma
Guide for the Differential Expression Analysis of RNAseq data using limma