davidrequena/multifastats

length inversed

Opened this issue · 1 comments

lmanchon commented

--Hi,

i think i have pointed an error:
try with this file:

test_DNA_regular
CATCTCTACGCGATACTGGTCTCGTAACTTCTAGAACGTTGGTGCGCTACACTGATTTTT
TGTTGGTCTACGTGAGGTGTTGTCACAGTCCAGTTGCGATGTCGCACATTAGATAGTAAG
CTCTAGCCACGATATACGCTGAGATGAACACACGGGCACCAAATACCTGACAAAACTATC
TTCTAGGGTGCGCTCTCCTTGTGCCCACAGGGGGACCCATCACGGTTAGATCCCGAAGTG
CGTGTCACCACTCCCTCTTCTCACTTGTGGTAAGGTGGTGCGACATCCTCCCGCCAGTCT
ATTTGGCAAGGCCACCGATATGGGATCCCGAGATCTGCTGCATTCATTCGTCACCTCACA
ACCGGTGCCTAGCCTGCGGCCGTCCCCTGACGGTGCATAATCATACCTTTTGGACGTCGA
ATTCAGAATCCTCTCGGTTCGATCCCCGCTTGTGGAGTATGTGTTCCACACCTAGATATT
GTCTTTTGAAGAGCCAGCACGGAAGCATCTCTGCAACGCATCGGCAATATGGGCGACGAG
AAGACAAGGCGGTGAGTTTGGTGTCTCAGACTAAATATCTAAAATATTGCGACCAGGTGG
TGACCTTTCTGGTCCCACTATCTCCTTTTGCCAACTTCGCTGGAAAGAGATTAATGACCC
CTCATGTGTCCGGGAGTGATTCCCACCGGTACAGTTTCTGTCCGCGGGTGTGCAGGCCTA
GATGTCGTCCGCACAAGTTGCCACAGCATAGATGCTAAATCTGCGGCGACCCAACACTAC
GCAGGCCTTAAATACTTTAGATAGCGCGGCCACGCGAGACTAACTCAGACCCTCTAGGCA
GTCTTTGGAAGCTTATCTGCCTCCTCTCATGACACCTCCCTGCAGCGTCCATTAATCGCA
CGCACTAGAAATGTCGAGCACTATATATAGCGTGCCGAATTTGCGCCAGTCTTTACATTG
AGTCCCGCCCACCCAGGAGGTGCAGTGTGGAGACAGATTC
test_DNA_small
CATCTCTACGCGATACTGGTCTCGTAACTTCTAGAACGTTGGTGCGCTACACTGATTTTT
TGTTGGTCTACGTGAGGTGTTGTCACAGTCCAGTTGCGATGTCGCACATTAGATAGTAAG
CTCTAGCCACGATATACGCTGAGATGAACACACGGGCACCAAATACCTGACAAAACTATC
GTCTTTGGAAGCTTATCTGCCTCCTCTCATGACACCTCCCTGCAGCGTCCATTAATCGCA
CGCACTAGAAATGTCGAGCACTATATATAGCGTGCCGAATTTGCGCCAGTCTTTACATTG
AGTCCCGCCCACCCAGGAGGTGCAGTGTGGAGACAGATTC

/multifastats.py -f test.fasta -s

more single_testfasta_051017111839.csv
N,ID,Type,Length,%GC,Mol Weight
1,test_DNA_regular,DNA,340,51.90,308032.08
2,test_DNA_small,DNA,1000,48.82,104741.75

the length of sequence are inversed !

best,
Laurent --

davidrequena commented

Thanks Laurent! I'll fix this.